Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30258
         (607 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.07 |vma4||V-type ATPase subunit E|Schizosaccharomyces p...    76   4e-15
SPBC3B9.09 |vps36||RBZ zinc finger protein Vps36|Schizosaccharom...    28   0.92 
SPBC14C8.04 |||acetolactate synthase regulatory unit|Schizosacch...    28   0.92 
SPBC215.14c |vps20||vacuolar sorting protein Vps20|Schizosacchar...    26   3.7  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    25   6.5  
SPBC215.10 |||haloacid dehalogenase-like hydrolase|Schizosacchar...    25   8.6  
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   8.6  

>SPAC11E3.07 |vma4||V-type ATPase subunit E|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 227

 Score = 76.2 bits (179), Expect = 4e-15
 Identities = 44/156 (28%), Positives = 80/156 (51%)
 Frame = +2

Query: 107 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMEYSEKXEK 286
           LSD  VQ ++  M++FI+Q                F +EK ++V++Q   I +  +   K
Sbjct: 3   LSDEQVQAEMHKMVSFIKQEALEKAKEIHTLSEEEFQVEKAKIVREQCDAIDQTYDMKLK 62

Query: 287 QXELXKKIQSSNMLNQARLXXLKVREDHVRNVLDEXRKRLAEVPKDTKLYSELLVTLIVQ 466
           +  + +KI  SN+LN++RL  L  ++  + ++     K+L  + +    Y++ +  LIVQ
Sbjct: 63  RASMAQKIAKSNVLNKSRLEILNSKQKVIDDIFSRVEKKLDGIEQKKDAYTKFMADLIVQ 122

Query: 467 ALFQLMEPTVTIRVRQTDKALVESLLGKAPTDYKNK 574
           A+  L EP   +  RQ D  +V++ + KA    K+K
Sbjct: 123 AMELLGEPVGIVYSRQRDAEIVKAAIPKATEVLKSK 158


>SPBC3B9.09 |vps36||RBZ zinc finger protein
           Vps36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 467

 Score = 28.3 bits (60), Expect = 0.92
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -3

Query: 602 RLSTQHPS*SYSCSLLGLFRAGTPPEPCR 516
           RLS +H   S++C +      G P  PCR
Sbjct: 89  RLSLRHVEKSWACKICTFINVGDPINPCR 117


>SPBC14C8.04 |||acetolactate synthase regulatory
           unit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 289

 Score = 28.3 bits (60), Expect = 0.92
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +1

Query: 16  TSFPEPVINFLALYRPFFVLVVLKISSSHGAQRCRCSE-TDQAHD 147
           T+ P+ V NFL+L RP+ VL   +  +S   +    +E T++A D
Sbjct: 233 TATPDRVDNFLSLLRPYGVLEACRTGTSAMTRAPHSNEVTEEAED 277


>SPBC215.14c |vps20||vacuolar sorting protein
           Vps20|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 226

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 4/102 (3%)
 Frame = +2

Query: 236 VQQQRLKIMEYSEKXEKQXELXKKIQSSNMLN---QARLXXLKVREDHVRNVLDEXRKRL 406
           +++QR K++ YS++ EK  +L   I    + +   +  L  LK ++ +   ++ +   +L
Sbjct: 18  IKEQRDKLLRYSKRLEKIEQLEIDIARKCLRDSDKRGALRALKAKKLY-SGLITQTYGQL 76

Query: 407 AEVPKDTKLYSELLVTLIVQ-ALFQLMEPTVTIRVRQTDKAL 529
             +    +L S +  TLI +  +F L E T  IR  Q D  L
Sbjct: 77  GNI---EQLLSTIEFTLIQKDVMFGLQEGTNLIRQLQADMPL 115


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = -1

Query: 568 LVVCWGFSEQGLHQSLVGLTDADGDSGFHELEESLHNKCDQQL*VQFGV 422
           L+V     EQG    ++   D+  +SG HE+ + L N  DQQL  Q  +
Sbjct: 492 LIVACEELEQGFDLDIL---DSLRESGIHEVIQLLRNFPDQQLEKQLNI 537


>SPBC215.10 |||haloacid dehalogenase-like
           hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +2

Query: 365 DHVRNVLDEXRKRLAEVPKDTKLYSELLVTLIVQALFQLMEP 490
           D   N L+E +KRLA +P D     E+ +T  +   F+++ P
Sbjct: 181 DDDTNGLEEAKKRLAGIPSD-----EVALTQALPQTFEIIPP 217


>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 780

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 106 RHGCCLFLTPLTRKTADIE 50
           RHGCC+    L R   DI+
Sbjct: 619 RHGCCILQRCLDRTNGDIQ 637


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,104,656
Number of Sequences: 5004
Number of extensions: 35521
Number of successful extensions: 101
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)