Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30258
(607 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0134 + 26805329-26805430,26807130-26807230,26807876-268080... 106 1e-23
05_05_0231 + 23488588-23488689,23488775-23488875,23489012-234891... 93 2e-19
01_01_0858 - 6699126-6699128,6699219-6699318,6700052-6700278,670... 92 3e-19
09_02_0115 + 4413714-4414475 32 0.41
06_01_0675 + 4937309-4937354,4937606-4937718,4937810-4937905,493... 31 0.94
06_02_0090 + 11604017-11604082,11604345-11604397,11604710-11605229 29 3.8
11_06_0042 + 19550260-19550278,19550418-19550530,19551841-195520... 28 5.0
03_06_0108 + 31708713-31709079,31709258-31709822,31709933-317100... 28 5.0
03_01_0005 + 46370-46454,46962-47071,47381-47545,47672-48463,487... 27 8.7
>01_06_0134 +
26805329-26805430,26807130-26807230,26807876-26808032,
26808386-26808582,26809188-26809287,26809501-26809536
Length = 230
Score = 106 bits (255), Expect = 1e-23
Identities = 59/156 (37%), Positives = 89/156 (57%)
Frame = +2
Query: 107 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMEYSEKXEK 286
++DADV KQI+ M+ FI Q FNIEK +LV+ ++ KI + E+ EK
Sbjct: 1 MNDADVAKQIQQMVRFIRQEAEEKASEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
Query: 287 QXELXKKIQSSNMLNQARLXXLKVREDHVRNVLDEXRKRLAEVPKDTKLYSELLVTLIVQ 466
Q E+ KKI+ S LN +R+ L+ ++D V ++ ++ K+L V + Y LL L+VQ
Sbjct: 61 QVEVRKKIEYSMQLNASRIKVLQAQDDLVNSMKEDATKQLLRVSHNHHEYKNLLKELVVQ 120
Query: 467 ALFQLMEPTVTIRVRQTDKALVESLLGKAPTDYKNK 574
L +L EP V +R R+ D VES+L A +Y +K
Sbjct: 121 GLLRLKEPAVLLRCRKEDHHHVESVLHSAKNEYASK 156
>05_05_0231 +
23488588-23488689,23488775-23488875,23489012-23489168,
23489365-23489594,23489696-23489795,23489878-23489916
Length = 242
Score = 93.1 bits (221), Expect = 2e-19
Identities = 58/169 (34%), Positives = 90/169 (53%), Gaps = 11/169 (6%)
Frame = +2
Query: 107 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMEYSEKXEK 286
++DADV KQI+ M+ FI Q FNIEK +LV+ ++ +I + E+ K
Sbjct: 1 MNDADVGKQIQQMVRFILQEAEEKASEISVAAEEEFNIEKLQLVESEKRRIRQDYERKAK 60
Query: 287 QXELXKKIQSSNMLNQARLXXLKVREDHVRNVLDEXRKRLAEVPKDTKLYSELLVTLIVQ 466
Q ++ +KI+ S LN AR+ L+ ++ V + ++ K L V KD Y ++L LIVQ
Sbjct: 61 QVDVGRKIEYSTQLNAARIKVLRAQDGVVGEMKEDAGKSLLRVTKDATAYRKVLKGLIVQ 120
Query: 467 -----------ALFQLMEPTVTIRVRQTDKALVESLLGKAPTDYKNKIK 580
+L +L EP+V +R R+ D+ VES+L A +Y K K
Sbjct: 121 RKDSEIIDQIQSLLRLREPSVVLRCREADRGHVESVLEAAKKEYAEKAK 169
>01_01_0858 -
6699126-6699128,6699219-6699318,6700052-6700278,
6701032-6701188,6701422-6701522,6702147-6702251
Length = 230
Score = 92.3 bits (219), Expect = 3e-19
Identities = 56/166 (33%), Positives = 87/166 (52%), Gaps = 10/166 (6%)
Frame = +2
Query: 107 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMEYSEKXEK 286
++D DV +Q+K M FI Q F IEK +LV+ ++ +I E+ EK
Sbjct: 2 MNDGDVARQLKQMTDFIRQEAVEKAAEIEAAAAEEFQIEKLQLVEAEKKRIRLEFERNEK 61
Query: 287 QXELXKKIQSSNMLNQARLXXLKVREDHVRNVLDEXRKRLAEVPKDTKLYSELLVTLIV- 463
Q ++ KKI+ S LN +RL L+ ++D ++L+ K L + +D +Y LL IV
Sbjct: 62 QGDIKKKIEYSKQLNASRLEVLQAQDDLAMSMLEAAGKELLYITRDHHVYKNLLRIFIVQ 121
Query: 464 ---------QALFQLMEPTVTIRVRQTDKALVESLLGKAPTDYKNK 574
Q+L +L EP V +R R+ D+ LVES+L A +Y +K
Sbjct: 122 DKLTKKNPEQSLLRLKEPAVILRCRKEDRELVESVLESAKNEYADK 167
>09_02_0115 + 4413714-4414475
Length = 253
Score = 31.9 bits (69), Expect = 0.41
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +1
Query: 436 LRAAGHTYCAGSLPAHGTHCHHPRPSNRQGSGG 534
LR H+ + SLP H HHPRP +GS G
Sbjct: 20 LRLFSHSSASASLPLLLGHFHHPRPVPPRGSPG 52
>06_01_0675 +
4937309-4937354,4937606-4937718,4937810-4937905,
4938003-4938059,4938145-4938300,4938402-4938486,
4938727-4938817,4938896-4939060,4939150-4939345,
4939593-4939731,4940187-4941874,4942575-4942765,
4942850-4942994
Length = 1055
Score = 30.7 bits (66), Expect = 0.94
Identities = 15/32 (46%), Positives = 23/32 (71%)
Frame = +2
Query: 239 QQQRLKIMEYSEKXEKQXELXKKIQSSNMLNQ 334
QQQ+L++ + S+ E Q +L +KIQ NML+Q
Sbjct: 638 QQQQLQLQQLSQP-EVQLQLLQKIQQQNMLSQ 668
>06_02_0090 + 11604017-11604082,11604345-11604397,11604710-11605229
Length = 212
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/34 (38%), Positives = 14/34 (41%)
Frame = +1
Query: 454 TYCAGSLPAHGTHCHHPRPSNRQGSGGVPARKSP 555
T + P H CH RP R G VP SP
Sbjct: 131 TSLLAATPGHRRDCHRARPPPRPGGRLVPVAASP 164
>11_06_0042 +
19550260-19550278,19550418-19550530,19551841-19552051,
19552164-19552401,19552662-19552752,19552883-19552917,
19554179-19554452
Length = 326
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +1
Query: 475 PAHGTHCHHPRPSNRQGSGGVPARKSPNRL 564
P+ C HP + R SGG A S NR+
Sbjct: 289 PSRPAFCMHPADATRTASGGETAAASANRV 318
>03_06_0108 +
31708713-31709079,31709258-31709822,31709933-31710015,
31710231-31710319,31710486-31710559,31710654-31710704,
31710807-31710883,31711454-31712031,31712388-31712555,
31713364-31713417,31713456-31713467,31713554-31713715
Length = 759
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 454 TYCAGSLPAHGTHCHHPRPSNRQGSGG 534
TYCAG + G H HH ++Q GG
Sbjct: 34 TYCAGGVDDVGHHHHHHVHQHQQQHGG 60
>03_01_0005 +
46370-46454,46962-47071,47381-47545,47672-48463,
48730-48840,48935-49195,49415-49638,49735-49855,
50673-51214,51302-51488,51569-51895,52047-52197,
52287-52424,52918-53013,53276-53357,54411-54679,
54769-54882,55050-55288,55488-55715,55799-55951,
56479-56616,57061-57188,57598-57718,58142-58306,
59486-59633,59772-59898,60025-60118,60119-60268,
60577-60624,60712-60819,61040-61114,61225-61275,
61341-61487,61584-61714,61944-62031,62204-62266,
62336-62582,62830-62981,63056-63126,63214-63370,
63520-63687
Length = 2323
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/52 (30%), Positives = 22/52 (42%)
Frame = +1
Query: 415 AKGHQTVLRAAGHTYCAGSLPAHGTHCHHPRPSNRQGSGGVPARKSPNRLQE 570
+KG V+RA Y G HG H + + S + GV + P R E
Sbjct: 115 SKGSHQVMRAEWEKYLLGKAELHGLHRKNKKTSQQLKGFGVLDGEVPMRSGE 166
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,623,155
Number of Sequences: 37544
Number of extensions: 277278
Number of successful extensions: 784
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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