Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30258
(607 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52835| Best HMM Match : vATP-synt_E (HMM E-Value=2.1e-05) 49 3e-06
SB_5351| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.31
SB_50642| Best HMM Match : Spectrin (HMM E-Value=1) 31 0.72
SB_59156| Best HMM Match : FlaC_arch (HMM E-Value=0.77) 31 0.72
SB_35649| Best HMM Match : M (HMM E-Value=6e-09) 29 2.2
SB_55427| Best HMM Match : E-MAP-115 (HMM E-Value=0.077) 29 3.9
SB_25419| Best HMM Match : PH (HMM E-Value=2.8e-16) 29 3.9
SB_34646| Best HMM Match : DUF1233 (HMM E-Value=3) 27 8.9
SB_25631| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
SB_43160| Best HMM Match : Occludin_ELL (HMM E-Value=8.4) 27 8.9
SB_6394| Best HMM Match : FlaC_arch (HMM E-Value=0.77) 27 8.9
>SB_52835| Best HMM Match : vATP-synt_E (HMM E-Value=2.1e-05)
Length = 288
Score = 48.8 bits (111), Expect = 3e-06
Identities = 24/61 (39%), Positives = 37/61 (60%)
Frame = +2
Query: 353 KVREDHVRNVLDEXRKRLAEVPKDTKLYSELLVTLIVQALFQLMEPTVTIRVRQTDKALV 532
K E + +LDE +RL +V +D Y +++ LI Q L+QL+E V IR R+ D +LV
Sbjct: 68 KAEEIDAKRILDEAVERLGKVTQDQGKYQQIIQGLITQGLYQLLESKVLIRCRKQDVSLV 127
Query: 533 E 535
+
Sbjct: 128 K 128
>SB_5351| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 870
Score = 32.3 bits (70), Expect = 0.31
Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 3/102 (2%)
Frame = +2
Query: 218 IEKGRLVQQQRLKIM-EYSEKXEKQXELXKKIQSSNMLNQARLXXLKVREDHVRNVLDEX 394
+E+ RL ++QR+K+ E+ E+ EK ++++ N +A K +ED R +DE
Sbjct: 441 LEEQRL-EEQRIKMQKEFEEEQEKARRKEEEVRKRNEEMKAAQEAKKKQEDRRRKEMDEE 499
Query: 395 RKRLAEVPKDTKLYSELLVTLIVQALF--QLMEPTVTIRVRQ 514
R+ AE+ + KL +E+ A+ P T+R +Q
Sbjct: 500 RE--AELAR--KLDAEIAAKKAAGAMAARSSSPPIPTLRAKQ 537
>SB_50642| Best HMM Match : Spectrin (HMM E-Value=1)
Length = 739
Score = 31.1 bits (67), Expect = 0.72
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +2
Query: 338 RLXXLKVREDHVRNVLDEXRKRLAEV 415
R+ LK +ED ++N+LDE R + EV
Sbjct: 147 RINTLKTKEDEIKNILDEQRGKAEEV 172
>SB_59156| Best HMM Match : FlaC_arch (HMM E-Value=0.77)
Length = 339
Score = 31.1 bits (67), Expect = 0.72
Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 5/101 (4%)
Frame = +2
Query: 281 EKQXELXKKIQSSNMLNQARLXXLKVREDHVRNVLDEXRKRLAEVPKDT-----KLYSEL 445
EK + ++ SS++ +A + R + + N L E + RLA+V K+ +L E
Sbjct: 16 EKNKDWLTQLPSSSVKIRACVIPRDSRIEELENQLSELKHRLADVVKERDGMRKELGKEK 75
Query: 446 LVTLIVQALFQLMEPTVTIRVRQTDKALVESLLGKAPTDYK 568
L + F +EP + K +E K PTD+K
Sbjct: 76 KPFLQPRKPFCDLEPKAQFHKKSEIKKWLEKQFEKLPTDWK 116
>SB_35649| Best HMM Match : M (HMM E-Value=6e-09)
Length = 1279
Score = 29.5 bits (63), Expect = 2.2
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
Frame = +2
Query: 218 IEKGRLVQQQRLKIMEYSEKXEKQXELXKKIQSS-NMLNQA------RLXXLKVREDHVR 376
+E R + + + Y EK EKQ + +++QS N+L +A + K+ D++
Sbjct: 948 LETERQLSELSKETCHYKEKVEKQNQEIQELQSKINLLYKAVEEKDSEINNQKIENDNLG 1007
Query: 377 NVLDEXRKRLAEVPKD 424
V+D R+ L + +
Sbjct: 1008 KVVDSMRENLQSIESE 1023
>SB_55427| Best HMM Match : E-MAP-115 (HMM E-Value=0.077)
Length = 599
Score = 28.7 bits (61), Expect = 3.9
Identities = 29/125 (23%), Positives = 56/125 (44%), Gaps = 2/125 (1%)
Frame = +2
Query: 215 NIEKGRLVQQQRLKIMEYSEKXEKQXELXKKIQSSNMLNQARLXXLKVREDHVRNVLDEX 394
N EKGRL ++R + ++ K EK+ K+ +A++ + R+ L++
Sbjct: 98 NFEKGRLELEKRRQDLQDKLKREKEEREAKERAEEERRQRAKMEAEQRRQAE----LEKQ 153
Query: 395 RKRLAEVPKDTKLYSELLVTLIVQALFQLMEPTVTIRVRQTDKALVESLLGK--APTDYK 568
R++ E+ ++ E+L ++Q Q R ++ K VE LL + D
Sbjct: 154 RQQQMEMERE----QEVLRKQMIQQRLQAQIEAERQRQKEWQKRKVEELLNQKGLEQDIV 209
Query: 569 NKIKK 583
N +K+
Sbjct: 210 NNLKQ 214
>SB_25419| Best HMM Match : PH (HMM E-Value=2.8e-16)
Length = 453
Score = 28.7 bits (61), Expect = 3.9
Identities = 20/71 (28%), Positives = 37/71 (52%)
Frame = +2
Query: 218 IEKGRLVQQQRLKIMEYSEKXEKQXELXKKIQSSNMLNQARLXXLKVREDHVRNVLDEXR 397
IEK R +++RLK+ + ++ E+Q ++ +ARL +RE R V+ +
Sbjct: 51 IEKER--EEERLKLEKEHQRMEEQQRQQQEALKQAEEERARLREQLIRE---REVMQREK 105
Query: 398 KRLAEVPKDTK 430
RL ++ +D K
Sbjct: 106 SRLMKLQQDYK 116
>SB_34646| Best HMM Match : DUF1233 (HMM E-Value=3)
Length = 209
Score = 27.5 bits (58), Expect = 8.9
Identities = 29/98 (29%), Positives = 42/98 (42%), Gaps = 9/98 (9%)
Frame = +2
Query: 302 KKIQSSNMLNQARLXXL----KVREDHVRNVLDEXRKRLAEVPKDT-----KLYSELLVT 454
KK + + ML Q R L R + + N L E + RLA+V K+ +L E
Sbjct: 16 KKQRLAYMLPQVREIGLCDSRDSRIEELENQLSELKHRLADVVKERDGMRKELGKEKKPF 75
Query: 455 LIVQALFQLMEPTVTIRVRQTDKALVESLLGKAPTDYK 568
L + F +EP + K +E K PTD+K
Sbjct: 76 LQPRKHFCDLEPKAQFHKKSEIKKWLEKQFEKLPTDWK 113
>SB_25631| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 743
Score = 27.5 bits (58), Expect = 8.9
Identities = 27/102 (26%), Positives = 43/102 (42%)
Frame = +2
Query: 266 YSEKXEKQXELXKKIQSSNMLNQARLXXLKVREDHVRNVLDEXRKRLAEVPKDTKLYSEL 445
Y K E++ L + IQS NM K + N L+ +P+D L ++
Sbjct: 112 YLSKVEREDHLEQGIQSENMRKLRSKAGDKATSNAKENTLNAAYGARYTIPQDHSLLTDH 171
Query: 446 LVTLIVQALFQLMEPTVTIRVRQTDKALVESLLGKAPTDYKN 571
V L ++AL + + +T D+ +VES K KN
Sbjct: 172 GV-LYLRALSEALLFEITFAA--VDQVVVESDATKLYYGIKN 210
>SB_43160| Best HMM Match : Occludin_ELL (HMM E-Value=8.4)
Length = 116
Score = 27.5 bits (58), Expect = 8.9
Identities = 29/98 (29%), Positives = 42/98 (42%), Gaps = 9/98 (9%)
Frame = +2
Query: 302 KKIQSSNMLNQARLXXL----KVREDHVRNVLDEXRKRLAEVPKDT-----KLYSELLVT 454
KK + + ML Q R L R + + N L E + RLA+V K+ +L E
Sbjct: 16 KKQRLAYMLPQVREIGLCDSRDSRIEELENQLSELKHRLADVVKERDGMRKELGKEKKPF 75
Query: 455 LIVQALFQLMEPTVTIRVRQTDKALVESLLGKAPTDYK 568
L + F +EP + K +E K PTD+K
Sbjct: 76 LQPRKPFCDLEPKAQFHKKSEIKKWLEKQFEKLPTDWK 113
>SB_6394| Best HMM Match : FlaC_arch (HMM E-Value=0.77)
Length = 149
Score = 27.5 bits (58), Expect = 8.9
Identities = 29/98 (29%), Positives = 42/98 (42%), Gaps = 9/98 (9%)
Frame = +2
Query: 302 KKIQSSNMLNQARLXXL----KVREDHVRNVLDEXRKRLAEVPKDT-----KLYSELLVT 454
KK + + ML Q R L R + + N L E + RLA+V K+ +L E
Sbjct: 16 KKQRLAYMLPQVREIGLCDSRDSRIEELENQLSELKHRLADVVKERDGMRKELGKEKKPF 75
Query: 455 LIVQALFQLMEPTVTIRVRQTDKALVESLLGKAPTDYK 568
L + F +EP + K +E K PTD+K
Sbjct: 76 LQPRKPFCDLEPKAQFHKKSEIKKWLEKQFEKLPTDWK 113
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,134,284
Number of Sequences: 59808
Number of extensions: 290074
Number of successful extensions: 843
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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