Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30258
(607 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF045642-4|AAK67210.1| 226|Caenorhabditis elegans Vacuolar h at... 149 1e-36
U40946-4|AAA81726.1| 414|Caenorhabditis elegans Hypothetical pr... 31 0.64
Z81513-2|CAB04186.2| 489|Caenorhabditis elegans Hypothetical pr... 30 1.1
AF515833-1|AAM55225.1| 489|Caenorhabditis elegans synaptonemal ... 30 1.1
AF016677-7|AAB66144.1| 292|Caenorhabditis elegans Hypothetical ... 29 1.9
AL031621-2|CAA20934.2| 1000|Caenorhabditis elegans Hypothetical ... 29 3.4
U39667-1|AAC69010.1| 188|Caenorhabditis elegans Hypothetical pr... 28 4.5
>AF045642-4|AAK67210.1| 226|Caenorhabditis elegans Vacuolar h
atpase protein 8 protein.
Length = 226
Score = 149 bits (362), Expect = 1e-36
Identities = 78/146 (53%), Positives = 93/146 (63%)
Frame = +2
Query: 107 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMEYSEKXEK 286
+SD DVQKQ++HMMAFIEQ FNIEKGRLVQQQR KIME+ EK EK
Sbjct: 3 ISDNDVQKQLRHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQQQRQKIMEFFEKKEK 62
Query: 287 QXELXKKIQSSNMLNQARLXXLKVREDHVRNVLDEXRKRLAEVPKDTKLYSELLVTLIVQ 466
Q EL +KIQ+SN LN RL LK REDH+ VLDE R L+ + D Y +L L++Q
Sbjct: 63 QVELQRKIQASNSLNAGRLRCLKAREDHIGAVLDEARSNLSRISGDAARYPAILKGLVMQ 122
Query: 467 ALFQLMEPTVTIRVRQTDKALVESLL 544
L QL+E V +R R+ D LVE LL
Sbjct: 123 GLLQLLEKEVVLRCREKDLRLVEQLL 148
>U40946-4|AAA81726.1| 414|Caenorhabditis elegans Hypothetical
protein W05H9.1 protein.
Length = 414
Score = 31.1 bits (67), Expect = 0.64
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Frame = +2
Query: 248 RLKIMEYSEKXEKQXELXKKIQSSNMLNQARLXXLKVREDHVRNVLDEXRK-RLAEVPKD 424
++K + ++ ++Q ++ K Q+S L Q R LK + D + LDE RK +L E+ D
Sbjct: 144 KIKQKQEEKEAQRQEQIEKWKQASEKLQQQR-EELKQQIDAAKQKLDERRKQKLEELKTD 202
Query: 425 TKLYSELL 448
EL+
Sbjct: 203 LAQVKELV 210
>Z81513-2|CAB04186.2| 489|Caenorhabditis elegans Hypothetical
protein F26D2.2 protein.
Length = 489
Score = 30.3 bits (65), Expect = 1.1
Identities = 31/118 (26%), Positives = 50/118 (42%)
Frame = +2
Query: 248 RLKIMEYSEKXEKQXELXKKIQSSNMLNQARLXXLKVREDHVRNVLDEXRKRLAEVPKDT 427
R IM +K EK EL SS + QA+ + +R+D R L+E + L +
Sbjct: 163 REMIMAAKQKHEKLVEL----NSSCAMMQAKYDEMIIRQDQDREALEEGKLNLKASEEKL 218
Query: 428 KLYSELLVTLIVQALFQLMEPTVTIRVRQTDKALVESLLGKAPTDYKNKIKKDVVLKV 601
+ E VTL Q LFQ + + +K + + A +N+ K + K+
Sbjct: 219 EQMREDCVTLRSQ-LFQFEASRSQDKTTEIEKEIEKITAETAKVRVENEQLKASLSKI 275
>AF515833-1|AAM55225.1| 489|Caenorhabditis elegans synaptonemal
complex protein SYP-1 protein.
Length = 489
Score = 30.3 bits (65), Expect = 1.1
Identities = 31/118 (26%), Positives = 50/118 (42%)
Frame = +2
Query: 248 RLKIMEYSEKXEKQXELXKKIQSSNMLNQARLXXLKVREDHVRNVLDEXRKRLAEVPKDT 427
R IM +K EK EL SS + QA+ + +R+D R L+E + L +
Sbjct: 163 REMIMAAKQKHEKLVEL----NSSCAMMQAKYDEMIIRQDQDREALEEGKLNLKASEEKL 218
Query: 428 KLYSELLVTLIVQALFQLMEPTVTIRVRQTDKALVESLLGKAPTDYKNKIKKDVVLKV 601
+ E VTL Q LFQ + + +K + + A +N+ K + K+
Sbjct: 219 EQMREDCVTLRSQ-LFQFEASRSQDKTTEIEKEIEKITAETAKVRVENEQLKASLSKI 275
>AF016677-7|AAB66144.1| 292|Caenorhabditis elegans Hypothetical
protein ZK1240.8 protein.
Length = 292
Score = 29.5 bits (63), Expect = 1.9
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Frame = +2
Query: 215 NIEKGRL--VQQQRLKIMEYS-EKXEKQXELXKKIQSSNMLNQARLXXLKVREDHVRNVL 385
++E G++ V + RLK M+ + E Q E ++ S+ L +L +K +R ++
Sbjct: 132 SVEAGKIRDVLECRLKQMKLNAESFTVQLEEFREAMSNRQLFIEKLSEIKYHFSRIRQLV 191
Query: 386 DEXRKRLAE 412
DE KR+ +
Sbjct: 192 DEREKRITD 200
>AL031621-2|CAA20934.2| 1000|Caenorhabditis elegans Hypothetical
protein F28H6.4 protein.
Length = 1000
Score = 28.7 bits (61), Expect = 3.4
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
Frame = +2
Query: 356 VREDHVRNVLDEXRKRLA---EVPKDTKLYSELLVTLIVQALFQLMEPTVTIRVRQTDKA 526
VRE + RNV +E R+R A + + + Y + ++V L + +T KA
Sbjct: 235 VRESYTRNVWEEFRRRYASTSNIKRSPETYRGRFLRILVPNLHIMPFDVMT-------KA 287
Query: 527 LVESLLGK-APTDYKNKIKKDVVLKVD 604
+ LG+ P +Y++ I+ + KVD
Sbjct: 288 VFYQHLGQPVPLEYRHIIRSAIDAKVD 314
>U39667-1|AAC69010.1| 188|Caenorhabditis elegans Hypothetical
protein C18A11.6 protein.
Length = 188
Score = 28.3 bits (60), Expect = 4.5
Identities = 10/36 (27%), Positives = 25/36 (69%)
Frame = +2
Query: 251 LKIMEYSEKXEKQXELXKKIQSSNMLNQARLXXLKV 358
+K+ + +++ +K +L KK++ N++ QARL +++
Sbjct: 90 VKVKKANKEAKKAEKLAKKLEEDNLIEQARLDNVEL 125
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,863,158
Number of Sequences: 27780
Number of extensions: 211842
Number of successful extensions: 590
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 589
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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