Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30258
(607 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g11150.1 68417.m01807 vacuolar ATP synthase subunit E / V-ATP... 111 5e-25
At3g08560.1 68416.m00993 vacuolar ATP synthase subunit E, putati... 101 3e-22
At1g64200.1 68414.m07273 vacuolar ATP synthase subunit E, putati... 97 1e-20
At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly id... 31 0.78
At3g03790.2 68416.m00389 ankyrin repeat family protein / regulat... 29 3.2
At3g03790.1 68416.m00388 ankyrin repeat family protein / regulat... 29 3.2
At4g27180.1 68417.m03904 kinesin-like protein B (KATB) 28 5.5
>At4g11150.1 68417.m01807 vacuolar ATP synthase subunit E / V-ATPase
E subunit / vacuolar proton pump E subunit (VATE)
identical to SP|Q39258 Vacuolar ATP synthase subunit E
(EC 3.6.3.14) (V-ATPase E subunit) (Vacuolar proton pump
E subunit) {Arabidopsis thaliana}
Length = 230
Score = 111 bits (266), Expect = 5e-25
Identities = 61/158 (38%), Positives = 89/158 (56%)
Frame = +2
Query: 107 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMEYSEKXEK 286
++D DV +QI+ M+ FI Q FNIEK +LV+ ++ KI + EK EK
Sbjct: 1 MNDGDVSRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQDYEKKEK 60
Query: 287 QXELXKKIQSSNMLNQARLXXLKVREDHVRNVLDEXRKRLAEVPKDTKLYSELLVTLIVQ 466
Q ++ KKI S LN +R+ L+ ++D V + D+ K L V +D Y +LL LIVQ
Sbjct: 61 QADVRKKIDYSMQLNASRIKVLQAQDDIVNAMKDQAAKDLLNVSRDEYAYKQLLKDLIVQ 120
Query: 467 ALFQLMEPTVTIRVRQTDKALVESLLGKAPTDYKNKIK 580
L +L EP+V +R R+ D LVE++L A +Y K K
Sbjct: 121 CLLRLKEPSVLLRCREEDLGLVEAVLDDAKEEYAGKAK 158
>At3g08560.1 68416.m00993 vacuolar ATP synthase subunit E, putative
/ V-ATPase E subunit, putative / vacuolar proton pump E
subunit, putative similar to SP|Q39258 Vacuolar ATP
synthase subunit E (EC 3.6.3.14) (V-ATPase E subunit)
(Vacuolar proton pump E subunit) {Arabidopsis thaliana};
contains Pfam profile PF01991: ATP synthase (E/31 kDa)
subunit
Length = 235
Score = 101 bits (243), Expect = 3e-22
Identities = 54/158 (34%), Positives = 88/158 (55%)
Frame = +2
Query: 107 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMEYSEKXEK 286
++DADV KQI+ M+ FI Q FNIE+ +L++ + K+ + ++ K
Sbjct: 1 MNDADVSKQIQQMVRFIRQEAEEKANEISISAEEEFNIERLQLLESAKRKLRQDYDRKLK 60
Query: 287 QXELXKKIQSSNMLNQARLXXLKVREDHVRNVLDEXRKRLAEVPKDTKLYSELLVTLIVQ 466
Q ++ K+I S LN +R+ L+ ++D V + D K L V D Y +LL +LI++
Sbjct: 61 QVDIRKRIDYSTQLNASRIKYLQAQDDVVTAMKDSAAKDLLRVSNDKNNYKKLLKSLIIE 120
Query: 467 ALFQLMEPTVTIRVRQTDKALVESLLGKAPTDYKNKIK 580
+L +L EP+V +R R+ DK +VES++ A Y K K
Sbjct: 121 SLLRLKEPSVLLRCREMDKKVVESVIEDAKRQYAEKAK 158
>At1g64200.1 68414.m07273 vacuolar ATP synthase subunit E, putative
/ V-ATPase E subunit, putative / vacuolar proton pump E
subunit, putative similar to SP|Q39258 Vacuolar ATP
synthase subunit E (EC 3.6.3.14) (V-ATPase E subunit)
(Vacuolar proton pump E subunit) {Arabidopsis thaliana};
contains Pfam profile PF01991: ATP synthase (E/31 kDa)
subunit
Length = 237
Score = 96.7 bits (230), Expect = 1e-20
Identities = 60/164 (36%), Positives = 87/164 (53%), Gaps = 6/164 (3%)
Frame = +2
Query: 107 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMEYSEKXEK 286
++DAD QI+ M+ FI Q FNIEK +LV+ ++ KI + EK EK
Sbjct: 1 MNDADASIQIQQMVRFIRQEAEEKANEISISSEEEFNIEKLQLVEAEKKKIRQEYEKKEK 60
Query: 287 QXELXKKIQSSNMLNQARLXXLKVREDHVRNVLDEXRKRLAEVPK------DTKLYSELL 448
Q ++ KKI S LN +R+ L+ ++D V + +E K+L +V + Y LL
Sbjct: 61 QVDVRKKIDYSMQLNASRIKVLQAQDDIVNAMKEEAAKQLLKVSQHGFFNHHHHQYKHLL 120
Query: 449 VTLIVQALFQLMEPTVTIRVRQTDKALVESLLGKAPTDYKNKIK 580
LIVQ L +L EP V +R R+ D +VES+L A +Y K K
Sbjct: 121 KDLIVQCLLRLKEPAVLLRCREEDLDIVESMLDDASEEYCKKAK 164
>At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly
identical to auxin transport protein; BIG [Arabidopsis
thaliana] GI:21779966; contains Pfam profiles PF02207:
Putative zinc finger in N-recognin, PF00569: Zinc finger
ZZ type
Length = 5098
Score = 30.7 bits (66), Expect = 0.78
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +1
Query: 418 KGHQTVLRAAGHTYC-AGSLPAHGTHCHHPRPSNRQGSGGVPARKSPN 558
+GH+ V + +C G+ G+ C +P G+G PAR + N
Sbjct: 1613 RGHRVVYSRSSRFFCDCGAGGVRGSSCQCLKPRKYNGNGSAPARGTNN 1660
>At3g03790.2 68416.m00389 ankyrin repeat family protein / regulator
of chromosome condensation (RCC1) family protein similar
to hect domain and RLD 2 GB:NP_004658 [Homo sapiens];
contains Pfam PF00415: Regulator of chromosome
condensation (RCC1); contains Pfam PF00023: Ankyrin
repeat; similar to rjs (GI:3414809) [Mus musculus];
similar to HERC2 (GI:4079809) [Homo sapiens]
Length = 1081
Score = 28.7 bits (61), Expect = 3.2
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 49 ALYRPFFVLVVLKISSSHGAQRCRCSETDQAHDG 150
+LY P + +VLK S + A +CR E ++ +G
Sbjct: 508 SLYHPAYAPIVLKKSQTLQADKCREEENEELDEG 541
>At3g03790.1 68416.m00388 ankyrin repeat family protein / regulator
of chromosome condensation (RCC1) family protein similar
to hect domain and RLD 2 GB:NP_004658 [Homo sapiens];
contains Pfam PF00415: Regulator of chromosome
condensation (RCC1); contains Pfam PF00023: Ankyrin
repeat; similar to rjs (GI:3414809) [Mus musculus];
similar to HERC2 (GI:4079809) [Homo sapiens]
Length = 1078
Score = 28.7 bits (61), Expect = 3.2
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 49 ALYRPFFVLVVLKISSSHGAQRCRCSETDQAHDG 150
+LY P + +VLK S + A +CR E ++ +G
Sbjct: 505 SLYHPAYAPIVLKKSQTLQADKCREEENEELDEG 538
>At4g27180.1 68417.m03904 kinesin-like protein B (KATB)
Length = 745
Score = 27.9 bits (59), Expect = 5.5
Identities = 19/95 (20%), Positives = 38/95 (40%)
Frame = +2
Query: 266 YSEKXEKQXELXKKIQSSNMLNQARLXXLKVREDHVRNVLDEXRKRLAEVPKDTKLYSEL 445
Y E+ E + K+++ Q ++ ++N ++ K A++ + K+ E
Sbjct: 55 YKERCENTMDYVKRLRLCIRWFQELELDYAFEQEKLKNAMEMNEKHCADLEVNLKVKEEE 114
Query: 446 LVTLIVQALFQLMEPTVTIRVRQTDKALVESLLGK 550
L +I + V + QT+K LGK
Sbjct: 115 LNMVIDELRKNFASVQVQLAKEQTEKLAANESLGK 149
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,335,397
Number of Sequences: 28952
Number of extensions: 201040
Number of successful extensions: 529
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 527
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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