Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30257
         (748 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      36   0.008
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    28   1.2  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    27   2.8  
SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch...    26   5.0  
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    26   6.6  
SPAC4G9.13c |vps26|pep8|retromer complex subunit Vps26|Schizosac...    26   6.6  
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    25   8.7  

>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 35.5 bits (78), Expect = 0.008
 Identities = 29/109 (26%), Positives = 46/109 (42%), Gaps = 5/109 (4%)
 Frame = -3

Query: 383 RLYFL--H*FPTLPQGIFVKQFSFLCQYSNQLNRSHCRFFQQEYRHSRIH*NPGLYQYPH 210
           RL+F+    FP L   IF    +F+  +S+ L  S  R  +  Y H         + +  
Sbjct: 20  RLFFVCSFFFPLLYSFIFATLHAFVFLFSHTLVSSQFRRLKLPYHHHHTFTIEAFFYWFF 79

Query: 209 LLLYFGFSC-PFSLVSFCHLFQASFFPLASNFFDF--LSSFSHIFSCLY 72
              +F   C  F +  F H + ++  P    FF F   S FS +F+ L+
Sbjct: 80  FFFFFFSHCRRFHIAIFIHPYDSNVVPFFCFFFYFSLFSFFSFLFTSLH 128


>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
           SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = -3

Query: 137 FPLASNFFDFLSSFSHI-FSCLY 72
           FPLAS  F+FLS   HI + C+Y
Sbjct: 222 FPLASLAFEFLSRNGHINYGCIY 244


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +2

Query: 275  IYNGYGLTDLNTDIEKKIALQKFLEVELGISAKSTIEERNQAILDFV 415
            I+  Y L ++  DI  +  + K  ++EL +   S   + NQ + DF+
Sbjct: 1201 IFQAYLLKEMPNDIVSQFEMLKSKQIELTVQMASYEGDLNQNLCDFL 1247


>SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 716

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = +2

Query: 299 DLNTDIEKKIALQKFLEVELGISAKSTIEERNQAILDFVTKISVNTQTKDV 451
           D    +   IAL + + V  GI+ K+T +ERN+ I  F +K++      D+
Sbjct: 487 DKGLKLPPAIALVQSVVVPCGITNKTTDQERNE-IEGFCSKLADRLNAADI 536


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +2

Query: 302 LNTDIEKKIALQKFLEVELGISAKSTIEERNQAILDFVTKISVNTQT 442
           LN DI +        +V+  +   +++EE+N    +FVT IS   QT
Sbjct: 374 LNDDITQDELNSSNADVDEEVIETTSLEEKNVDNQEFVTSISNGNQT 420


>SPAC4G9.13c |vps26|pep8|retromer complex subunit
           Vps26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 298

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +2

Query: 233 DSNEFLNVDILVEKIYNGYGLTDLNTDIEKKIALQKFLEVEL 358
           D N      I +    NGY LT    D+ KK +++ +L + L
Sbjct: 233 DGNPNRGETIPLRMFLNGYALTPTFRDVNKKFSVRYYLSLIL 274


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1465

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
 Frame = -3

Query: 380  LYFLH*FPTLPQGIFVKQFSFLCQ--YSNQLNRSHCRFFQQEYRHSRIH*NPGLYQYPHL 207
            +Y+++ F +   G+ +  F F+      N       + + +E   S    NP  Y Y  +
Sbjct: 890  VYWMY-FKSCSIGLILLYFFFIISGIMMNVATNVWLKHWSEENGKSSSELNPSPYFYLGI 948

Query: 206  LLYFGF-SCPF 177
             L+FGF SC F
Sbjct: 949  YLFFGFLSCAF 959


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,198,938
Number of Sequences: 5004
Number of extensions: 40085
Number of successful extensions: 100
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)