Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30257
(748 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0266 - 16582912-16584918,16585041-16585229 29 3.9
12_02_0269 - 16617292-16618852,16622763-16623562 29 5.2
11_01_0694 - 5719188-5720400,5720439-5721194,5722004-5722247,572... 29 5.2
10_06_0018 - 9674771-9674995,9675079-9675126,9675471-9675530,967... 29 5.2
07_01_0794 - 6179424-6179714,6179797-6179844,6180189-6180248,618... 29 5.2
08_02_0431 + 17053928-17054189,17054296-17054564,17054661-170548... 28 6.9
02_04_0488 + 23397480-23397687,23397777-23397805,23398462-233985... 28 9.1
>12_02_0266 - 16582912-16584918,16585041-16585229
Length = 731
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -3
Query: 200 YFGFSCPFSLVSFCHLFQASFFPLASNFFDF 108
YF F + L C+LFQ + L FF F
Sbjct: 388 YFSFRAIYDLSPICNLFQLRYLKLEGIFFQF 418
>12_02_0269 - 16617292-16618852,16622763-16623562
Length = 786
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -3
Query: 200 YFGFSCPFSLVSFCHLFQASFFPLASNFFDF 108
YF F + L C+LFQ + L N F F
Sbjct: 587 YFPFRATYDLSPVCNLFQLRYLKLEGNRFQF 617
>11_01_0694 -
5719188-5720400,5720439-5721194,5722004-5722247,
5723862-5723901
Length = 750
Score = 28.7 bits (61), Expect = 5.2
Identities = 19/72 (26%), Positives = 38/72 (52%)
Frame = +2
Query: 275 IYNGYGLTDLNTDIEKKIALQKFLEVELGISAKSTIEERNQAILDFVTKISVNTQTKDVA 454
++ G G + N + + L +FLE+ + KST E R+ +++ + S+N + A
Sbjct: 253 VHTGEGQSSSNLPLLEHAILDEFLELSRLENVKSTQEARSIKLIEKESINSLNLEWTGGA 312
Query: 455 QKNLFDKLNILG 490
+ + D +N+LG
Sbjct: 313 DRFVED-MNVLG 323
>10_06_0018 -
9674771-9674995,9675079-9675126,9675471-9675530,
9675693-9675758,9675844-9675906,9675985-9676032,
9676150-9676215,9676493-9676558,9676660-9676725,
9676822-9676887,9676975-9677058,9677310-9677654,
9677738-9677833,9678129-9678332,9678434-9678726,
9678833-9678958,9679217-9679226
Length = 643
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/26 (53%), Positives = 19/26 (73%)
Frame = +2
Query: 209 NVDIDIDQDSNEFLNVDILVEKIYNG 286
N D+DID +SNE +VDI V ++ NG
Sbjct: 25 NDDVDIDDESNEDTDVDINV-RVENG 49
>07_01_0794 -
6179424-6179714,6179797-6179844,6180189-6180248,
6180411-6180476,6180562-6180624,6180703-6180750,
6180868-6180933,6181031-6181096,6181230-6181295,
6181510-6181575,6181663-6181746,6181839-6181907,
6181998-6182342,6182426-6182521,6182615-6182707,
6182817-6183020,6183117-6183385,6183492-6183753
Length = 753
Score = 28.7 bits (61), Expect = 5.2
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Frame = +2
Query: 209 NVDIDIDQDSNEFLNVDILVEKIYNGYGLTDLNTDIEKKIALQKFLEVELGIS-AKSTIE 385
N D+DID + NE +VDI V ++ NG T T ++ L K L + + + +
Sbjct: 67 NDDVDIDDEGNEDTDVDINV-RVENGAPETRGKTKLKDVWNLPKGLRIVVQCNDLNQAVG 125
Query: 386 ERNQAILDFVTKISVN 433
E + + F+ IS N
Sbjct: 126 EEDGILGKFLGMISRN 141
>08_02_0431 +
17053928-17054189,17054296-17054564,17054661-17054864,
17054974-17055066,17055160-17055255,17055339-17055683,
17055935-17056018,17056106-17056171,17056268-17056333,
17056436-17056501,17056635-17056700,17056798-17056863,
17056981-17057028,17057107-17057169,17057255-17057320,
17057483-17057542,17057888-17057935,17058019-17058255,
17058346-17058366
Length = 741
Score = 28.3 bits (60), Expect = 6.9
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = +2
Query: 209 NVDIDIDQDSNEFLNVDILVEKIYNGYGLTDLNTDIEKKIALQKFLEV 352
N D+DID + NE +VDI V ++ NG T T ++ L K L +
Sbjct: 67 NDDVDIDDEGNEDTDVDINV-RVENGAPETRGKTKLKDVWNLPKGLRI 113
>02_04_0488 +
23397480-23397687,23397777-23397805,23398462-23398564,
23398811-23398982,23399380-23399440,23399757-23399889,
23400438-23400709,23400776-23400843,23401096-23401235,
23401413-23401499,23401580-23402088,23402173-23402990,
23403024-23403222,23403662-23403817
Length = 984
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = +2
Query: 206 VNVDIDIDQDSNEFLNVDILVEKIYNGYGLTDLNTDIEKKIALQKFLEVEL 358
VN + ++ E +N+D + Y L+D ++D++KK K L L
Sbjct: 536 VNGHFEEEECDEEIMNIDASSDSSLEPYDLSDDDSDLQKKFTQLKDLAAAL 586
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,520,138
Number of Sequences: 37544
Number of extensions: 202477
Number of successful extensions: 414
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 413
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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