Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30256
         (590 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb...    26   3.6  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    26   3.6  
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr...    25   8.3  
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    25   8.3  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    25   8.3  

>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 649

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = -1

Query: 200 RSNSNLKNTSVFF--SK*CEFQYLDREDD 120
           +S+ N ++T +F+  S   E QYLD EDD
Sbjct: 616 KSDKNTQSTLLFYDPSSTTEAQYLDNEDD 644


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2104

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 282 LVAVNVSCHVTLFDRSIVPTL*SNEFLEIK 193
           LVAVN  CH+ ++   +V    S +F E K
Sbjct: 126 LVAVNPYCHLPIYGDDVVRKYQSKQFKETK 155


>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 553

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +1

Query: 70  QSHRF*VLN*VTQQCWKSSSRSKYWNSHHFEKKTEV 177
           +SHR  + + +T +C      +KY+NS HFE K  V
Sbjct: 107 KSHR--IKDKITTKC---KGTTKYFNSRHFEIKNAV 137


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 290 WCCHCEYPNP 319
           WCCHC Y  P
Sbjct: 486 WCCHCGYILP 495


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1396

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +2

Query: 293  CCHCEYPNPYQLLLNYVLSYAEKW 364
            C +C Y N  +L++ +   Y  KW
Sbjct: 1334 CQYCPYKNADELMVGFGYHYNHKW 1357


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,213,975
Number of Sequences: 5004
Number of extensions: 41485
Number of successful extensions: 82
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)