Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30254
         (453 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    21   5.4  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    21   5.4  
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    21   7.1  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    21   7.1  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    20   9.4  

>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 8/39 (20%), Positives = 19/39 (48%)
 Frame = +1

Query: 133 KLREEVTFAHSSANEVLEKTGYKNNVVLYRPKRLQNKFE 249
           +L  +  FAH ++NE      + + +++     L+ K +
Sbjct: 580 ELARKAAFAHLNSNEARATLNWVSKLIIRSNPSLEEKLQ 618


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -2

Query: 74  TTTSSLEVKASKSA 33
           TTTS  +VKASK++
Sbjct: 197 TTTSPTKVKASKAS 210


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +1

Query: 334 VRQKDNIHDFSNPLIVAYYDVDYTKNPKGTNYWRN 438
           VRQ     D ++PL+   ++  Y+  P   + W N
Sbjct: 5   VRQVKQEADSTSPLLTPPHNPAYSPPPSYCDPWYN 39


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 227 SDSRTSLKTLLLPSTETPRKCHSKL 301
           ++S   LKTL+L + +     HSKL
Sbjct: 51  NNSLNELKTLILDAMKKDPARHSKL 75


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +3

Query: 282 ESVTQSFHQGELSRS 326
           E +T  FH GE+  S
Sbjct: 562 EKLTMKFHDGEVDAS 576


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.314    0.133    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,663
Number of Sequences: 336
Number of extensions: 2164
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10301074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.0 bits)