Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30254
(453 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 33 0.027
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 30 0.19
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid... 29 0.25
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 29 0.44
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 1.3
SPBP8B7.12c |fta3|sma3|Sim4 and Mal2 associated |Schizosaccharom... 26 2.3
SPAC6F6.11c |||pyridoxine-pyridoxal-pyridoxamine kinase |Schizos... 26 3.1
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 26 3.1
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 4.1
SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|... 25 4.1
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 25 4.1
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe... 25 5.4
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb... 25 5.4
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 25 5.4
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 7.2
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 24 9.5
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 24 9.5
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 24 9.5
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos... 24 9.5
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 24 9.5
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 24 9.5
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 24 9.5
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1... 24 9.5
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p... 24 9.5
SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|ch... 24 9.5
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G... 24 9.5
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 24 9.5
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 24 9.5
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 24 9.5
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 24 9.5
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 24 9.5
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 32.7 bits (71), Expect = 0.027
Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 2/98 (2%)
Frame = -2
Query: 293 SDTFSVSPSKATEESSNLFWSRLGRYKTTLFLYPVFSR--TSLAEE*AKVTSSLNLSAVL 120
S + +S S AT SS+ S L ++ F P S TSL ++ +SS + S
Sbjct: 44 SSSSMLSSSSATAISSSSSSSPLS---SSSFTSPASSSFITSLVSSSSQQSSSSSASLTS 100
Query: 119 RNSPFRSDSFSKNPTTTTSSLEVKASKSATVRSSLELG 6
+S + S S +PT+++SS + +S S+ V SS G
Sbjct: 101 SSSATLTSSSSASPTSSSSSHALSSSSSSLVASSSSSG 138
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 29.9 bits (64), Expect = 0.19
Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 6/99 (6%)
Frame = -2
Query: 293 SDTFSVSPSKATEESSNLFWSRLGRYKTTLFLYPVFSRTSLAEE*AKVTSSLNLSAVLRN 114
+ T S SP+ ++ SS+ S L TT S TS + + +TSS S+ +
Sbjct: 97 NSTTSASPTSSSLTSSSATSSSLASSSTTSSSLASSSITSSSLASSSITSSSLASSSTTS 156
Query: 113 SPFRSDSF----SKNPTT--TTSSLEVKASKSATVRSSL 15
S S S S PT+ T+SSL A+ ++ SSL
Sbjct: 157 SSLASSSTNSTTSATPTSSATSSSLSSTAASNSATSSSL 195
Score = 27.5 bits (58), Expect = 1.0
Identities = 19/50 (38%), Positives = 24/50 (48%)
Frame = -2
Query: 158 AKVTSSLNLSAVLRNSPFRSDSFSKNPTTTTSSLEVKASKSATVRSSLEL 9
A TSS S NS S S + +TTS+ +S S+TV SS L
Sbjct: 206 ATATSSSLSSTAASNSATSSSLASSSLNSTTSATATSSSISSTVSSSTPL 255
Score = 24.6 bits (51), Expect = 7.2
Identities = 27/94 (28%), Positives = 40/94 (42%), Gaps = 2/94 (2%)
Frame = -2
Query: 293 SDTFSVSPSKATEESSNLFWSRLGRYKTTLFLYPVFSR--TSLAEE*AKVTSSLNLSAVL 120
S S S + ++ SS++ S L TT S T+ A + TSS S
Sbjct: 127 SSLASSSITSSSLASSSITSSSLASSSTTSSSLASSSTNSTTSATPTSSATSSSLSSTAA 186
Query: 119 RNSPFRSDSFSKNPTTTTSSLEVKASKSATVRSS 18
NS S S + +TTS+ +S S+T S+
Sbjct: 187 SNSATSSSLASSSLNSTTSATATSSSLSSTAASN 220
>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
peptidyl-prolyl cis-trans isomerase
Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 610
Score = 29.5 bits (63), Expect = 0.25
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = -2
Query: 188 FSRTSLAEE*AKVTSSLNLSAVLRNSPFRSDSFSKNPT 75
F+R SL ++ K ++ +L + N+P +SF K+PT
Sbjct: 366 FTRLSLYQQAPKKSNLPSLDVIASNNPLVEESFQKDPT 403
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 28.7 bits (61), Expect = 0.44
Identities = 18/70 (25%), Positives = 31/70 (44%)
Frame = +1
Query: 58 KDEVVVVGFFEKESDLKGEFLKTADKLREEVTFAHSSANEVLEKTGYKNNVVLYRPKRLQ 237
K V+ G + + L+ A T + S +NE+ EKT K + L + K++
Sbjct: 1235 KVNAVLAGLQKNDPSAYSNMLE-ATHFELSTTSSTSDSNEI-EKTQEKKRLALEKQKKIM 1292
Query: 238 NKFEDSSVAF 267
+F D +F
Sbjct: 1293 QQFRDQQASF 1302
>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 700
Score = 27.1 bits (57), Expect = 1.3
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Frame = +1
Query: 100 DLKGEFLKTADKLREEVTFAHSSANEVLEKTGYKNNVVLYRPKRLQNKFEDSSVAFDGDT 279
++ F + D+L E E+L +G +NNV+L R + S+ F+G
Sbjct: 232 EINAGFKEVGDELSENF----QRKQEIL--SGLQNNVILRTNNRKPVGSDGSNSNFNGGE 285
Query: 280 EKVSLK--AFIKENYHGLVGVRQKDNI 354
E++ K I++ + L+ V +KD +
Sbjct: 286 EQMDSKDQEEIQDYLNSLLSVHEKDGV 312
>SPBP8B7.12c |fta3|sma3|Sim4 and Mal2 associated
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 220
Score = 26.2 bits (55), Expect = 2.3
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = -2
Query: 194 PVFSRTSLAEE*AKVTSSLNLSA--VLRNSPFRSDSFSKNPTTTTSSLEVKASKSATVRS 21
P+ L+EE K+ SS+ ++ + + + + +SSLE+ ASK + RS
Sbjct: 104 PLNETEHLSEENLKIESSITFTSEEIEKEKENIKSVLLPSVQSISSSLELYASKESDYRS 163
Query: 20 SLE 12
S+E
Sbjct: 164 SIE 166
>SPAC6F6.11c |||pyridoxine-pyridoxal-pyridoxamine kinase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 25.8 bits (54), Expect = 3.1
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +1
Query: 130 DKLREEVTFAHSSANEVLEKT 192
DKL++ V A SS +EV++KT
Sbjct: 248 DKLKKSVEMALSSVHEVIQKT 268
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 3.1
Identities = 18/83 (21%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Frame = +1
Query: 211 VLYRPKRLQ--NKFEDSSVAFDGDTEKVSLKAFIKENYHGLVGVRQKDNIHDFSNPLIVA 384
+L +P ++Q NK + + F+G ++ FI++ + K N+ DF L +
Sbjct: 110 LLRQPGKVQGSNKGDRLTKTFEGFRNQLDKVQFIRK-------LMSKANVDDFHTRLFIL 162
Query: 385 YYDVDYTKNPKGTNYWRNRVLKV 453
+ + K NYW++ + ++
Sbjct: 163 WMLPYSLRKLKERNYWKSEISEI 185
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 4.1
Identities = 13/41 (31%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Frame = -2
Query: 149 TSSLNLSAVLRNSPFRSDS-FSKNPTTTTSSLEVKASKSAT 30
+SS + S+ L +S S S FS +PT+++S++ +S ++
Sbjct: 312 SSSSSFSSTLSSSSMSSSSSFSSSPTSSSSTISSSSSSPSS 352
>SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 759
Score = 25.4 bits (53), Expect = 4.1
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +2
Query: 245 LKTLLLPSTETPRKCHSKLSSRRTI-TVWSAFAKRTTSMISATPLL 379
L LL T + S++S + T T W AKRT S S T LL
Sbjct: 221 LSNLLKLYTNSNTVTSSRISLKHTDPTKWQKHAKRTASSNSLTDLL 266
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.4 bits (53), Expect = 4.1
Identities = 24/95 (25%), Positives = 43/95 (45%)
Frame = -2
Query: 293 SDTFSVSPSKATEESSNLFWSRLGRYKTTLFLYPVFSRTSLAEE*AKVTSSLNLSAVLRN 114
+ + +S S SS++ S + + L +S + + V+SS +L ++ +
Sbjct: 632 TSSLMISSSSIISGSSSILSSSISTIPISSSL-STYSSSVIPSSSTLVSSSSSL--IVSS 688
Query: 113 SPFRSDSFSKNPTTTTSSLEVKASKSATVRSSLEL 9
SP S S S P++++ AS S SSL L
Sbjct: 689 SPVASSSSSPIPSSSSLVSTYSASLSNITHSSLSL 723
>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 564
Score = 25.0 bits (52), Expect = 5.4
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Frame = +1
Query: 142 EEVTFAHSSANEVLEKTGYKNNVVLYRPKRLQNKFEDSS--VAFDGDTEKVSLKAFIKEN 315
E V F EK K +Y R+Q K D S + F D+E+ S K F+++
Sbjct: 418 ERVRFLRKFIENDFEKM--KRLFKIYDRLRIQLKGIDQSRKLDFSPDSEEKSTKWFLQQI 475
Query: 316 YHGL 327
HGL
Sbjct: 476 DHGL 479
>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1328
Score = 25.0 bits (52), Expect = 5.4
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Frame = +1
Query: 136 LREEVTFAHSSAN---EVLEKTGYKNNVVLYRPKRLQNKFED--SSVAFDGDTEKV 288
LREEVTF +S N E+ + Y ++ L R + L+ +F++ S+ F D EK+
Sbjct: 223 LREEVTFGPASRNRSKELAHQKFYLLHLSLLR-EYLEFEFQECRSTFTFKYDLEKI 277
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 25.0 bits (52), Expect = 5.4
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = +1
Query: 124 TADKLREEVTFAHSSANEVLEKTGYKNNVVLYRPKRLQNKFEDSSVAFDGDTEKVSL 294
T D+ R ++ + NEV+ YK+N L R NK +D + EK +L
Sbjct: 567 TIDEYRNKLKDKEETYNEVMNAFQYKDN-DLRRFHESINKLQDREKELTSNLEKKNL 622
>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1877
Score = 24.6 bits (51), Expect = 7.2
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +1
Query: 205 NVVLYRPKRLQN 240
N+VLY PKR QN
Sbjct: 1328 NIVLYAPKRFQN 1339
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 24.2 bits (50), Expect = 9.5
Identities = 15/72 (20%), Positives = 32/72 (44%)
Frame = +1
Query: 238 NKFEDSSVAFDGDTEKVSLKAFIKENYHGLVGVRQKDNIHDFSNPLIVAYYDVDYTKNPK 417
NK + + F+G ++ FI++ + K N+ DF L + + + K
Sbjct: 121 NKGDRLTKTFEGFRNQLDKVQFIRK-------LMSKANVDDFHTRLFILWMLPYSLRKLK 173
Query: 418 GTNYWRNRVLKV 453
NYW++ + ++
Sbjct: 174 ERNYWKSEISEI 185
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 24.2 bits (50), Expect = 9.5
Identities = 15/72 (20%), Positives = 32/72 (44%)
Frame = +1
Query: 238 NKFEDSSVAFDGDTEKVSLKAFIKENYHGLVGVRQKDNIHDFSNPLIVAYYDVDYTKNPK 417
NK + + F+G ++ FI++ + K N+ DF L + + + K
Sbjct: 121 NKGDRLTKTFEGFRNQLDKVQFIRK-------LMSKANVDDFHTRLFILWMLPYSLRKLK 173
Query: 418 GTNYWRNRVLKV 453
NYW++ + ++
Sbjct: 174 ERNYWKSEISEI 185
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 24.2 bits (50), Expect = 9.5
Identities = 15/72 (20%), Positives = 32/72 (44%)
Frame = +1
Query: 238 NKFEDSSVAFDGDTEKVSLKAFIKENYHGLVGVRQKDNIHDFSNPLIVAYYDVDYTKNPK 417
NK + + F+G ++ FI++ + K N+ DF L + + + K
Sbjct: 121 NKGDRLTKTFEGFRNQLDKVQFIRK-------LMSKANVDDFHTRLFILWMLPYSLRKLK 173
Query: 418 GTNYWRNRVLKV 453
NYW++ + ++
Sbjct: 174 ERNYWKSEISEI 185
>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
Length = 953
Score = 24.2 bits (50), Expect = 9.5
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = -2
Query: 191 VFSRTSLAEE*AKVTSSLNLSAVLRNS-PFRSDSFSK 84
V SR EE K+T + +S LRNS P F K
Sbjct: 479 VLSRYPSVEEIDKITDKIEVSKPLRNSGPLAFKPFEK 515
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 24.2 bits (50), Expect = 9.5
Identities = 15/72 (20%), Positives = 32/72 (44%)
Frame = +1
Query: 238 NKFEDSSVAFDGDTEKVSLKAFIKENYHGLVGVRQKDNIHDFSNPLIVAYYDVDYTKNPK 417
NK + + F+G ++ FI++ + K N+ DF L + + + K
Sbjct: 121 NKGDRLTKTFEGFRNQLDKVQFIRK-------LMSKANVDDFHTRLFILWMLPYSLRKLK 173
Query: 418 GTNYWRNRVLKV 453
NYW++ + ++
Sbjct: 174 ERNYWKSEISEI 185
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 24.2 bits (50), Expect = 9.5
Identities = 15/72 (20%), Positives = 32/72 (44%)
Frame = +1
Query: 238 NKFEDSSVAFDGDTEKVSLKAFIKENYHGLVGVRQKDNIHDFSNPLIVAYYDVDYTKNPK 417
NK + + F+G ++ FI++ + K N+ DF L + + + K
Sbjct: 121 NKGDRLTKTFEGFRNQLDKVQFIRK-------LMSKANVDDFHTRLFILWMLPYSLRKLK 173
Query: 418 GTNYWRNRVLKV 453
NYW++ + ++
Sbjct: 174 ERNYWKSEISEI 185
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 24.2 bits (50), Expect = 9.5
Identities = 15/72 (20%), Positives = 32/72 (44%)
Frame = +1
Query: 238 NKFEDSSVAFDGDTEKVSLKAFIKENYHGLVGVRQKDNIHDFSNPLIVAYYDVDYTKNPK 417
NK + + F+G ++ FI++ + K N+ DF L + + + K
Sbjct: 121 NKGDRLTKTFEGFRNQLDKVQFIRK-------LMSKANVDDFHTRLFILWMLPYSLRKLK 173
Query: 418 GTNYWRNRVLKV 453
NYW++ + ++
Sbjct: 174 ERNYWKSEISEI 185
>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 743
Score = 24.2 bits (50), Expect = 9.5
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -2
Query: 179 TSLAEE*AKVTSSLNLSAVLRNSPFRSD-SFSKNPTTTTSSLE 54
++ +E +++TS NL + N PF SD +P T +E
Sbjct: 627 STASESKSEITSHQNLHTIPINKPFTSDRPLYSSPNDTLERVE 669
>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 24.2 bits (50), Expect = 9.5
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = -2
Query: 302 KALSDTFSVSPSKATEESSNLFWSRLGRYKTTLFLYPVFSRTSL 171
K + +TF P EE SN+ WS + + KT + + P+ + L
Sbjct: 185 KRMKETFKDDP----EEDSNMAWSIIHKIKTEV-VAPISEKKEL 223
>SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 411
Score = 24.2 bits (50), Expect = 9.5
Identities = 31/122 (25%), Positives = 52/122 (42%), Gaps = 11/122 (9%)
Frame = +1
Query: 58 KDEVVVVGFFEKESDLKGEFLKTADKLREEVTFAHSSANEVLEKTGYKNNVVLYRPKRLQ 237
+DE +VG K++ KG KT E+ + + G KNN K+ +
Sbjct: 20 QDENTLVG---KQALSKGTE-KTKLSTNFEINLPRRTVLSDVSNVG-KNNADEKDTKKAK 74
Query: 238 NKFEDSSVAFDGDTEKVSLKAFIK------ENYHGLVGVRQKDNI-----HDFSNPLIVA 384
F++S+++ + + +K F+K +N V QKD + H SNPL+
Sbjct: 75 RSFDESNLSTNEEADKPVESKFVKKLKVYSKNADPSVETLQKDRVSNVDDHLSSNPLMAE 134
Query: 385 YY 390
Y
Sbjct: 135 EY 136
>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
Gde1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1076
Score = 24.2 bits (50), Expect = 9.5
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +1
Query: 55 SKDEVVVVGFFEKESDLKGEFLKTADKLREEVTFAHSSAN 174
S DEV G+ E + +L ADKLR +V + N
Sbjct: 426 SVDEVDSSGWTAMEQAVVRGYLHLADKLRTQVALSDKPVN 465
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 24.2 bits (50), Expect = 9.5
Identities = 15/72 (20%), Positives = 32/72 (44%)
Frame = +1
Query: 238 NKFEDSSVAFDGDTEKVSLKAFIKENYHGLVGVRQKDNIHDFSNPLIVAYYDVDYTKNPK 417
NK + + F+G ++ FI++ + K N+ DF L + + + K
Sbjct: 121 NKGDRLTKTFEGFRNQLDKVQFIRK-------LMSKANVDDFHTRLFILWMLPYSLRKLK 173
Query: 418 GTNYWRNRVLKV 453
NYW++ + ++
Sbjct: 174 ERNYWKSEISEI 185
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 24.2 bits (50), Expect = 9.5
Identities = 15/72 (20%), Positives = 32/72 (44%)
Frame = +1
Query: 238 NKFEDSSVAFDGDTEKVSLKAFIKENYHGLVGVRQKDNIHDFSNPLIVAYYDVDYTKNPK 417
NK + + F+G ++ FI++ + K N+ DF L + + + K
Sbjct: 121 NKGDRLTKTFEGFRNQLDKVQFIRK-------LMSKANVDDFHTRLFILWMLPYSLRKLK 173
Query: 418 GTNYWRNRVLKV 453
NYW++ + ++
Sbjct: 174 ERNYWKSEISEI 185
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 24.2 bits (50), Expect = 9.5
Identities = 15/72 (20%), Positives = 32/72 (44%)
Frame = +1
Query: 238 NKFEDSSVAFDGDTEKVSLKAFIKENYHGLVGVRQKDNIHDFSNPLIVAYYDVDYTKNPK 417
NK + + F+G ++ FI++ + K N+ DF L + + + K
Sbjct: 121 NKGDRLTKTFEGFRNQLDKVQFIRK-------LMSKANVDDFHTRLFILWMLPYSLRKLK 173
Query: 418 GTNYWRNRVLKV 453
NYW++ + ++
Sbjct: 174 ERNYWKSEISEI 185
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 24.2 bits (50), Expect = 9.5
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -3
Query: 181 ELHWLKNEQK*PPPLICQLF*GTLLSGQIPFRRI 80
E+ W +Q+ P P QLF ++ ++ FRRI
Sbjct: 3581 EVFWWSKQQRKPIPQGIQLFETVKVNVELLFRRI 3614
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 24.2 bits (50), Expect = 9.5
Identities = 15/72 (20%), Positives = 32/72 (44%)
Frame = +1
Query: 238 NKFEDSSVAFDGDTEKVSLKAFIKENYHGLVGVRQKDNIHDFSNPLIVAYYDVDYTKNPK 417
NK + + F+G ++ FI++ + K N+ DF L + + + K
Sbjct: 121 NKGDRLTKTFEGFRNQLDKVQFIRK-------LMSKANVDDFHTRLFILWMLPYSLRKLK 173
Query: 418 GTNYWRNRVLKV 453
NYW++ + ++
Sbjct: 174 ERNYWKSEISEI 185
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.314 0.133 0.376
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,869,283
Number of Sequences: 5004
Number of extensions: 38486
Number of successful extensions: 151
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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