Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30254
(453 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_35157| Best HMM Match : Thioredoxin (HMM E-Value=0) 130 4e-31
SB_48081| Best HMM Match : No HMM Matches (HMM E-Value=.) 81 4e-16
SB_42595| Best HMM Match : Thioredoxin (HMM E-Value=0) 39 0.002
SB_51093| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.59
SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05) 30 0.78
SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20) 29 1.4
SB_1597| Best HMM Match : PHD (HMM E-Value=1.4e-05) 29 1.8
SB_54008| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_29019| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_28657| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_13906| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_35625| Best HMM Match : DUF296 (HMM E-Value=0.0053) 28 3.1
SB_46289| Best HMM Match : DUF1690 (HMM E-Value=0.32) 28 4.2
SB_35177| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.5
SB_32575| Best HMM Match : SNF7 (HMM E-Value=1.1) 27 5.5
SB_26755| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.5
SB_57195| Best HMM Match : UPF0126 (HMM E-Value=1.8) 27 5.5
SB_55225| Best HMM Match : efhand (HMM E-Value=5.7e-12) 27 5.5
SB_10884| Best HMM Match : Antimicrobial11 (HMM E-Value=0.091) 27 5.5
SB_9517| Best HMM Match : GDI (HMM E-Value=1.8e-14) 27 5.5
SB_25624| Best HMM Match : PHD (HMM E-Value=1.3e-17) 27 7.3
SB_22463| Best HMM Match : VWA (HMM E-Value=0) 27 7.3
SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23) 27 7.3
SB_51780| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3
SB_25690| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3
SB_16952| Best HMM Match : AAA_5 (HMM E-Value=0.47) 27 7.3
SB_44024| Best HMM Match : Flavin_Reduct (HMM E-Value=0.79) 27 9.6
SB_59004| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
>SB_35157| Best HMM Match : Thioredoxin (HMM E-Value=0)
Length = 1056
Score = 130 bits (315), Expect = 4e-31
Identities = 62/143 (43%), Positives = 87/143 (60%), Gaps = 1/143 (0%)
Frame = +1
Query: 4 GPSSKELLTVADFEA-FTSKDEVVVVGFFEKESDLKGEFLKTADKLREEVTFAHSSANEV 180
GPSS E+ +V E + VVVGF + + DLK F++TA+++R+ +FAH+S +V
Sbjct: 647 GPSSVEIKSVDHLEKKLDDAESNVVVGFLDGDDDLKNAFMRTANEMRDSFSFAHASVTDV 706
Query: 181 LEKTGYKNNVVLYRPKRLQNKFEDSSVAFDGDTEKVSLKAFIKENYHGLVGVRQKDNIHD 360
LEK YKN +V++RPK L K E S +A+ G + +K FI HG VG R DN
Sbjct: 707 LEKYNYKNQIVVFRPKHLHTKLEPSFIAYTGSPDDFYIKKFINAKAHGRVGQRTPDNEEQ 766
Query: 361 FSNPLIVAYYDVDYTKNPKGTNY 429
F PL V ++DVD+ KN KG N+
Sbjct: 767 FPKPLCVVFFDVDWKKNAKGHNF 789
>SB_48081| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 645
Score = 81.0 bits (191), Expect = 4e-16
Identities = 51/159 (32%), Positives = 90/159 (56%), Gaps = 8/159 (5%)
Frame = +1
Query: 1 VGPSSKELLTVADFEAFTS-KDEVVVVGFFEKESDLKGE-FLKTADKLREEVTFAHSSAN 174
VGPSS+ L ++ + F KD+V ++GFF+ E D E +L+ + +R++ FAH+
Sbjct: 282 VGPSSRILSSLKAVQDFMKEKDDVTIMGFFDGEDDKMLESYLEANNDVRDDYPFAHTFDA 341
Query: 175 EVLEKTGYK-NNVVLYRPKRLQNKFEDSSVAFDG-DTEKVSLKAFIKENYHGLVGV---R 339
+ G K +++VL++P+R +K+E ++G D +L+ F K+ LVG+
Sbjct: 342 AAKKHFGIKKSSIVLFQPERFLSKYEPKHFVYEGKDLSPAALQGFYKDKRVPLVGLYTSY 401
Query: 340 QKDNIHDFSNPLIVAYYDVDY-TKNPKGTNYWRNRVLKV 453
KD + + PL + YY VD+ N T +WR++V++V
Sbjct: 402 DKDKKY-AARPLCIVYYGVDFGFDNRVATQFWRSKVIEV 439
>SB_42595| Best HMM Match : Thioredoxin (HMM E-Value=0)
Length = 536
Score = 38.7 bits (86), Expect = 0.002
Identities = 24/52 (46%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Frame = +1
Query: 4 GPSSKELLTVADFEAFTSKDEVVVVGFF-EKESDLKGEFLKTADKLREEVTF 156
GP +K+L T + F +K EV VVGFF +KESD FL AD + ++V F
Sbjct: 131 GPPAKDLATADAMKDFITK-EVAVVGFFTDKESDAAKAFLSAADGI-DDVEF 180
>SB_51093| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 253
Score = 30.7 bits (66), Expect = 0.59
Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
Frame = +2
Query: 191 PDTKTMWSCIVPSDSRTSLKTLLLPSTETPRKCHSKLSSRRTITVWSAFAKRTTSMIS-A 367
P T + + PS S TS T PST TPR + +S + + + TTS S +
Sbjct: 42 PRTGSTTTTSAPSTSTTSNSTTRAPSTSTPRAGSTTTTSAPSTSTPRTGSTTTTSAPSTS 101
Query: 368 TPLLSLTMMLIIPRT 412
TP T P T
Sbjct: 102 TPRTGSTTTTSAPST 116
Score = 29.9 bits (64), Expect = 1.0
Identities = 27/85 (31%), Positives = 35/85 (41%)
Frame = +2
Query: 191 PDTKTMWSCIVPSDSRTSLKTLLLPSTETPRKCHSKLSSRRTITVWSAFAKRTTSMISAT 370
P T + + PS S TS T PST TPR S ++ R + T TTS+ A
Sbjct: 103 PRTGSTTTTSAPSTSTTSNSTTRAPSTSTPR-TGSTITLRTSTTSVMTTTPSTTSISRA- 160
Query: 371 PLLSLTMMLIIPRTRRALTTGGTVS 445
T P T T+ GT +
Sbjct: 161 ---GSTTTTSDPSTSNITTSTGTTN 182
>SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)
Length = 1878
Score = 30.3 bits (65), Expect = 0.78
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = -2
Query: 158 AKVTSSLNLSAVLR-NSPFRSDSFSKNPTTTTSSLEVKASKSAT 30
AK TS++ L NSP + S S+ T+TT SLEVK + + T
Sbjct: 1687 AKTTSTIRTELTLDVNSPKQEMSTSRPQTSTTLSLEVKDNLTKT 1730
>SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)
Length = 3489
Score = 29.5 bits (63), Expect = 1.4
Identities = 20/63 (31%), Positives = 30/63 (47%)
Frame = +1
Query: 88 EKESDLKGEFLKTADKLREEVTFAHSSANEVLEKTGYKNNVVLYRPKRLQNKFEDSSVAF 267
E+ DLK + LK D L+E +T + LEK + V L + L+ K + +
Sbjct: 855 EELEDLKAQHLKELDNLKEGITPEIDALKSELEKQHQEELVSL--KEYLEEKHQAEIKSI 912
Query: 268 DGD 276
DGD
Sbjct: 913 DGD 915
>SB_1597| Best HMM Match : PHD (HMM E-Value=1.4e-05)
Length = 763
Score = 29.1 bits (62), Expect = 1.8
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = -2
Query: 158 AKVTSSLNLSAVLRNSPFRSDSFSKNPTTTTSSLEVKASKSATVRSSLEL 9
AK+TS N + LR +PFR+ + P+ ++ S + R ++EL
Sbjct: 641 AKITSLGNEGSQLRRAPFRASAHHSRPSLLNNTKSGDISTNPGPRKAIEL 690
>SB_54008| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1940
Score = 28.7 bits (61), Expect = 2.4
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +1
Query: 1 VGPSSKELLTVADFEAFTSKDEVVVVGFFE-KESDLKGEFLKTADK 135
VG + L V E K+E V G + K S+ +GEF++ ADK
Sbjct: 500 VGEDERSSLAVEQQEDTRIKEEPVAQGNYNIKHSEEEGEFVEVADK 545
>SB_29019| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 646
Score = 28.7 bits (61), Expect = 2.4
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Frame = +2
Query: 221 VPSDSR--TSLKTLLLPSTETPRKCHSKLSSRRTITVWSAFAKRTTSMISATPLLSLTMM 394
+P D S L LPST S++ +I++ A+ T+ S+TP + T
Sbjct: 358 IPEDDSPPVSPPVLPLPSTGITGSIFSRILGSSSISMSLPPARPVTTTASSTPNVLTTSS 417
Query: 395 LIIPRTRRALTTGGT 439
++PR T GT
Sbjct: 418 PLLPRAGFGRTASGT 432
>SB_28657| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3296
Score = 28.7 bits (61), Expect = 2.4
Identities = 20/54 (37%), Positives = 27/54 (50%)
Frame = -2
Query: 191 VFSRTSLAEE*AKVTSSLNLSAVLRNSPFRSDSFSKNPTTTTSSLEVKASKSAT 30
+FS+ E VT++ +A NS + S TTTTSSL + S SAT
Sbjct: 359 IFSKCQQVGENTSVTTAATTTATQSNSMTTTSS-----TTTTSSLSSEGSSSAT 407
>SB_13906| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1067
Score = 28.7 bits (61), Expect = 2.4
Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 6/106 (5%)
Frame = -2
Query: 311 SLMKALSDTFSVSPSKATEESSNLFWSRLGRYKTTLFLYPVFSRTS------LAEE*AKV 150
+L +A++ + SVSP+ + +S++ +S + TT S T+ LAE A
Sbjct: 714 TLAQAVAISSSVSPTTTSVLTSSMEFSSMATTSTTTTPSLESSMTTNSTTSTLAEAVAIS 773
Query: 149 TSSLNLSAVLRNSPFRSDSFSKNPTTTTSSLEVKASKSATVRSSLE 12
+ L + + S S S + TT+T SLE + ++T + E
Sbjct: 774 SPVLPTTTSVLTSSMESSSIATTSTTSTPSLESSMTTNSTTSTLAE 819
Score = 27.5 bits (58), Expect = 5.5
Identities = 19/67 (28%), Positives = 32/67 (47%)
Frame = -2
Query: 212 TTLFLYPVFSRTSLAEE*AKVTSSLNLSAVLRNSPFRSDSFSKNPTTTTSSLEVKASKSA 33
T L + + T+LAE A +S + + S S S + TT+T SLE + ++
Sbjct: 347 TVLIIATNSTATTLAEAVAISSSVSPTTTSVLTSSMESSSMATTSTTSTPSLESSMTTNS 406
Query: 32 TVRSSLE 12
T + +E
Sbjct: 407 TTSTLVE 413
>SB_35625| Best HMM Match : DUF296 (HMM E-Value=0.0053)
Length = 885
Score = 28.3 bits (60), Expect = 3.1
Identities = 12/47 (25%), Positives = 28/47 (59%)
Frame = -2
Query: 194 PVFSRTSLAEE*AKVTSSLNLSAVLRNSPFRSDSFSKNPTTTTSSLE 54
P + + + E + VTSS+ S +++ +D+F + P +++S++E
Sbjct: 370 PSVTPSLTSSESSAVTSSMTSSVIMKQDSSLADAFDRAPMSSSSAVE 416
>SB_46289| Best HMM Match : DUF1690 (HMM E-Value=0.32)
Length = 947
Score = 27.9 bits (59), Expect = 4.2
Identities = 16/55 (29%), Positives = 28/55 (50%)
Frame = -2
Query: 182 RTSLAEE*AKVTSSLNLSAVLRNSPFRSDSFSKNPTTTTSSLEVKASKSATVRSS 18
RTS+ + + S+ + + +S SDS S +P TSS + + S +RS+
Sbjct: 852 RTSIPRSGSGNSYSVMATTIPTSSSATSDSSSPHPAMRTSSFTISGNPSPAMRST 906
>SB_35177| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1293
Score = 27.5 bits (58), Expect = 5.5
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = -2
Query: 122 LRNSPFRSDSFSKNPTTTTSSLEVKASK--SATVRSS 18
L+ SP RS +K+PT +TSS + K+ AT SS
Sbjct: 199 LKKSPKRSSHEAKSPTKSTSSHDTKSKSPCKATKESS 235
>SB_32575| Best HMM Match : SNF7 (HMM E-Value=1.1)
Length = 579
Score = 27.5 bits (58), Expect = 5.5
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 292 VTLSRCLRRRQQKSLQTCSGVAWDDTRP 209
VT++R LRR Q +S TC+ + D P
Sbjct: 33 VTMTRALRRYQDRSKVTCTRITDKDRTP 60
>SB_26755| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1607
Score = 27.5 bits (58), Expect = 5.5
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +1
Query: 268 DGDTEKVSLKAFIKENYHGLVGVRQKDN-IHDFSNPLIVAYYD 393
DG T KV +KAF K GL VR + + D S P+ A +D
Sbjct: 194 DGSTIKVEVKAFTKA---GLFTVRMSNGVVVDTSKPIAGAIFD 233
>SB_57195| Best HMM Match : UPF0126 (HMM E-Value=1.8)
Length = 1699
Score = 27.5 bits (58), Expect = 5.5
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +1
Query: 268 DGDTEKVSLKAFIKENYHGLVGVRQKDN-IHDFSNPLIVAYYD 393
DG T KV +KAF K GL VR + + D S P+ A +D
Sbjct: 140 DGSTIKVEVKAFTKA---GLFTVRMSNGVVVDTSKPIAGAIFD 179
>SB_55225| Best HMM Match : efhand (HMM E-Value=5.7e-12)
Length = 828
Score = 27.5 bits (58), Expect = 5.5
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +1
Query: 124 TADKLREEVTFAHSSANEVLEKTGYKNNVVLYRPKRLQNKFED 252
T+DK + HS +N K G KN PK+ + +F+D
Sbjct: 147 TSDKEAGKSIVKHSKSNTTSNKEGEKNTPTSKSPKKGRIRFKD 189
>SB_10884| Best HMM Match : Antimicrobial11 (HMM E-Value=0.091)
Length = 479
Score = 27.5 bits (58), Expect = 5.5
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +2
Query: 182 LKKPDTKTMWSCIVPSDSRTSLKTLLLPSTETPRKCHSKLSSRR 313
LK P T + + +D+R L LP+ +TP H +R+
Sbjct: 212 LKLPTEDTPYPTHLSTDNRKGRPNLKLPTEDTPNPTHLSTDNRK 255
Score = 27.5 bits (58), Expect = 5.5
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +2
Query: 182 LKKPDTKTMWSCIVPSDSRTSLKTLLLPSTETPRKCHSKLSSRR 313
LK P T + + +D+R L LP+ +TP H +R+
Sbjct: 284 LKLPTEDTPYPTHLSTDNRKGRPNLKLPTEDTPNPTHLSTDNRK 327
Score = 27.5 bits (58), Expect = 5.5
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +2
Query: 182 LKKPDTKTMWSCIVPSDSRTSLKTLLLPSTETPRKCHSKLSSRR 313
LK P T + + +D+R L LP+ +TP H +R+
Sbjct: 356 LKLPTEDTPYPTHLSTDNRKGRPNLKLPTKDTPNPTHLSTDNRK 399
Score = 26.6 bits (56), Expect = 9.6
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +2
Query: 182 LKKPDTKTMWSCIVPSDSRTSLKTLLLPSTETPRKCHSKLSSRR 313
LK P T + + +D+R L LP+ +TP H +R+
Sbjct: 164 LKLPTEDTPYPTHLSTDNRKERPNLKLPTEDTPYPTHLSTDNRK 207
Score = 26.6 bits (56), Expect = 9.6
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +2
Query: 182 LKKPDTKTMWSCIVPSDSRTSLKTLLLPSTETPRKCHSKLSSRR 313
LK P T + + +D+R L LP+ +TP H +R+
Sbjct: 188 LKLPTEDTPYPTHLSTDNRKGRPNLKLPTEDTPYPTHLSTDNRK 231
Score = 26.6 bits (56), Expect = 9.6
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +2
Query: 182 LKKPDTKTMWSCIVPSDSRTSLKTLLLPSTETPRKCHSKLSSRR 313
LK P T + + +D+R L LP+ +TP H +R+
Sbjct: 260 LKLPTEDTPYPTHLSTDNRKGRPNLKLPTEDTPYPTHLSTDNRK 303
>SB_9517| Best HMM Match : GDI (HMM E-Value=1.8e-14)
Length = 175
Score = 27.5 bits (58), Expect = 5.5
Identities = 12/51 (23%), Positives = 27/51 (52%)
Frame = -2
Query: 296 LSDTFSVSPSKATEESSNLFWSRLGRYKTTLFLYPVFSRTSLAEE*AKVTS 144
++D++ P T E L+ L RY + +LYP++ + + A++++
Sbjct: 26 INDSYKDQPFGQTVEKIKLYNESLSRYGKSPYLYPLYGLGEIPQGFARLSA 76
>SB_25624| Best HMM Match : PHD (HMM E-Value=1.3e-17)
Length = 1828
Score = 27.1 bits (57), Expect = 7.3
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +1
Query: 241 KFEDSSVAFDGDTEKVSLKAFIKENYHGLVGVRQKDNIHDFSNPLIVAYYDVD 399
KFE F+ + + +S+ IK GL+ R ++H F+ L++ YY+ D
Sbjct: 206 KFEKLKCHFNKNLKDISMNN-IKTLEAGLIPFRDFASLHLFALQLLINYYNND 257
>SB_22463| Best HMM Match : VWA (HMM E-Value=0)
Length = 1865
Score = 27.1 bits (57), Expect = 7.3
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +1
Query: 247 EDSSVAFDGDTEKVSLKAFIKENYHGLVG 333
++S+ DGD KV K F+K+ H LVG
Sbjct: 13 DNSAAVTDGDLTKV--KTFVKDLIHALVG 39
>SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23)
Length = 2123
Score = 27.1 bits (57), Expect = 7.3
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Frame = +2
Query: 191 PDTKTMWSCIVPSDS--RTSLKTLLLPSTETPRKCHSKLSSRRTITVWSAFAKRTTS 355
P T T + P + RT+ P T TPR + + RT T + K+TT+
Sbjct: 1771 PPTTTTTTTTTPETTAPRTTTPETTTPETTTPRTTTPETTKPRTTTPKTTTPKKTTA 1827
>SB_51780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 641
Score = 27.1 bits (57), Expect = 7.3
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +2
Query: 233 SRTSLKTLLLPSTETPRKCHSKLSSRRTITVWS-AFAKRTTSMISATPLLSLTMM 394
+R L+ + + CHS R + V S + KRT S++SAT +S+T +
Sbjct: 520 TRAFLREYSMRESRKDDYCHSIPERREPVQVKSMSTKKRTASVVSATSNVSVTSL 574
>SB_25690| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 322
Score = 27.1 bits (57), Expect = 7.3
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +1
Query: 247 EDSSVAFDGDTEKVSLKAFIKENYHGLVG 333
++S+ DGD KV K F+K+ H LVG
Sbjct: 162 DNSAAVTDGDLTKV--KTFVKDLIHALVG 188
>SB_16952| Best HMM Match : AAA_5 (HMM E-Value=0.47)
Length = 1345
Score = 27.1 bits (57), Expect = 7.3
Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 9/98 (9%)
Frame = +1
Query: 55 SKDEVVVVGFFEKESDLKGE-FLKTADKLREEV--TFAHSSANEVLEKTGYKNNVVLYRP 225
S+ V V +F+ +DL GE F++T D +R + A +S +L TG +
Sbjct: 321 SRARVPDVSYFDA-ADLLGEVFVETVDTVRTRMFMDLASTSGRNIL-LTGPRGCGKTSLI 378
Query: 226 KRLQNKFEDSS-----VAFDGDTEKVSLKAFIKEN-YH 321
+K ED + F G ++ VSL+ FI+ N YH
Sbjct: 379 NDFLDKQEDKNQIVKRYVFSGTSKAVSLQQFIENNIYH 416
>SB_44024| Best HMM Match : Flavin_Reduct (HMM E-Value=0.79)
Length = 308
Score = 26.6 bits (56), Expect = 9.6
Identities = 29/97 (29%), Positives = 41/97 (42%), Gaps = 12/97 (12%)
Frame = -2
Query: 287 TFSVSPSKATEESSNLFWSRLGRYKT---TLFLYPVFSRTSLAEE*AKVTSSLNLS---- 129
+F + ++AT S+ L + +LG T T F P + + TSS LS
Sbjct: 86 SFGATGTQATSASTGLSFGQLGNTSTSTLTAFGQPSTTSAPTGISFGQPTSSTGLSLGAS 145
Query: 128 -----AVLRNSPFRSDSFSKNPTTTTSSLEVKASKSA 33
L+ + S F P TTTSSL A+ SA
Sbjct: 146 SGLTLGGLQATTTTSGLFGAKPATTTSSLFSGANTSA 182
>SB_59004| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 462
Score = 26.6 bits (56), Expect = 9.6
Identities = 18/70 (25%), Positives = 34/70 (48%)
Frame = +1
Query: 85 FEKESDLKGEFLKTADKLREEVTFAHSSANEVLEKTGYKNNVVLYRPKRLQNKFEDSSVA 264
F K+S KG + + ++ + V +S +E T + V++ PKR+QN +++ +
Sbjct: 246 FPKKSTGKGSSMLSKTQIGKSVMRTGASKSE----TRKNHLTVIHNPKRVQNNYQELKLE 301
Query: 265 FDGDTEKVSL 294
E SL
Sbjct: 302 SISGLENPSL 311
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.314 0.133 0.376
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,626,344
Number of Sequences: 59808
Number of extensions: 266283
Number of successful extensions: 792
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 791
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 908427626
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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