Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30254
         (453 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439060-11|CAD27762.1| 1881|Anopheles gambiae putative cell-adh...    26   0.54 
DQ370045-1|ABD18606.1|  285|Anopheles gambiae putative TIL domai...    23   5.0  
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    23   6.7  

>AJ439060-11|CAD27762.1| 1881|Anopheles gambiae putative
           cell-adhesion protein protein.
          Length = 1881

 Score = 26.2 bits (55), Expect = 0.54
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +1

Query: 301 FIKENYHGLVGVRQKDNIHDFSNPLIVAYYDVDYTKNPKGTNYWR 435
           F+++ Y     VR K+N  +F +P++V   D D   +P     +R
Sbjct: 625 FVQKRYE----VRLKENAFEFESPIVVEARDSDLEGSPNSAVEYR 665


>DQ370045-1|ABD18606.1|  285|Anopheles gambiae putative TIL domain
           protein protein.
          Length = 285

 Score = 23.0 bits (47), Expect = 5.0
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 244 TCSGVAWDDTRPHCFC 197
           TCSG++ +  R  C+C
Sbjct: 226 TCSGISTEVCRRSCYC 241


>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 22.6 bits (46), Expect = 6.7
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 358  DFSNPLIVAYYDVDYTKN 411
            DF N  IVA+Y  + TKN
Sbjct: 1222 DFKNVSIVAHYIKERTKN 1239


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.314    0.133    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 447,486
Number of Sequences: 2352
Number of extensions: 9007
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 563,979
effective HSP length: 59
effective length of database: 425,211
effective search space used: 38694201
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)