Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30254
         (453 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    26   0.22 
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    25   0.39 
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   1.6  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   8.3  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 25.8 bits (54), Expect = 0.22
 Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = +1

Query: 238  NKFEDSSVAFDGDTEKVSLKAFIKENY--HGLVGVRQKDNIHDFSNP 372
            +KF D S+A DG  E+V LKA     Y   GL G    D+ +DF  P
Sbjct: 1569 DKF-DVSLALDG--ERVMLKASEDYRYSVRGLCGNFDHDSTNDFVGP 1612


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 25.0 bits (52), Expect = 0.39
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 343 KDNIHDFSNPLIVAYY 390
           + N H + NP+IV YY
Sbjct: 62  ESNSHQYKNPIIVMYY 77


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -1

Query: 303 ESFE*HFLGVSVEGNRR 253
           + FE +FL ++VE NRR
Sbjct: 406 KGFEEYFLNLTVENNRR 422


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 9/49 (18%), Positives = 21/49 (42%)
 Frame = +1

Query: 7   PSSKELLTVADFEAFTSKDEVVVVGFFEKESDLKGEFLKTADKLREEVT 153
           PS++E + + +      +  V            KGE+  +  +++E +T
Sbjct: 372 PSNEETIDINNGAELMQETHVCFFSLLRDAFTSKGEYRMSTGEMKEAIT 420


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.314    0.133    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,089
Number of Sequences: 438
Number of extensions: 2419
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11943513
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.0 bits)