Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30254
(453 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g21750.2 68414.m02723 protein disulfide isomerase, putative s... 58 4e-09
At1g21750.1 68414.m02722 protein disulfide isomerase, putative s... 58 4e-09
At1g77510.1 68414.m09026 protein disulfide isomerase, putative s... 42 3e-04
At3g22360.1 68416.m02823 alternative oxidase 1b, mitochondrial (... 30 0.84
At2g14520.1 68415.m01625 CBS domain-containing protein contains ... 30 0.84
At2g42070.1 68415.m05202 MutT/nudix family protein similar to SP... 29 1.5
At4g33320.1 68417.m04739 expressed protein contains Pfam profile... 28 2.6
At4g22190.1 68417.m03208 expressed protein 28 3.4
At3g27620.1 68416.m03450 alternative oxidase 1c, mitochondrial (... 28 3.4
At1g72890.1 68414.m08431 disease resistance protein (TIR-NBS cla... 27 4.5
At1g08060.2 68414.m00881 MOM1 identical to MOM1 (mutation in a '... 27 4.5
At1g08060.1 68414.m00880 MOM1 identical to MOM1 (mutation in a '... 27 4.5
At4g18640.1 68417.m02759 leucine-rich repeat transmembrane prote... 27 5.9
At3g28980.1 68416.m03622 expressed protein 27 5.9
At1g61970.1 68414.m06990 mitochondrial transcription termination... 27 5.9
At1g54130.1 68414.m06171 RelA/SpoT protein, putative (RSH3) iden... 27 5.9
At2g20720.1 68415.m02433 pentatricopeptide (PPR) repeat-containi... 27 7.8
At1g67500.1 68414.m07688 DNA polymerase family B protein similar... 27 7.8
>At1g21750.2 68414.m02723 protein disulfide isomerase, putative
similar to SP|P29828 Protein disulfide isomerase
precursor (PDI) (EC 5.3.4.1) {Medicago sativa}; isoform
contains non-consensus GA donor splice site at intron 9
Length = 487
Score = 57.6 bits (133), Expect = 4e-09
Identities = 46/139 (33%), Positives = 76/139 (54%), Gaps = 4/139 (2%)
Frame = +1
Query: 4 GPSSKELLTVADFEAFTSKDEVVVVGFFEKESDLKGE-FLKTADKLREEVTFAHSSANEV 180
GP+S E+ + D S +VVVVG F K S + + F+ A+KLR E+ FAH+S ++
Sbjct: 141 GPASAEIKSADDASEVVSDKKVVVVGIFPKLSGSEFDSFMAIAEKLRSELDFAHTSDAKL 200
Query: 181 LEK--TGYKNNVV-LYRPKRLQNKFEDSSVAFDGDTEKVSLKAFIKENYHGLVGVRQKDN 351
L + + VV L++P +F DS FDG+ +L+ F+KE+ L+ V KD
Sbjct: 201 LPRGESSVTGPVVRLFKP--FDEQFVDSK-DFDGE----ALEKFVKESSIPLITVFDKD- 252
Query: 352 IHDFSNPLIVAYYDVDYTK 408
++P ++ +++ TK
Sbjct: 253 --PNNHPYVIKFFESTNTK 269
>At1g21750.1 68414.m02722 protein disulfide isomerase, putative
similar to SP|P29828 Protein disulfide isomerase
precursor (PDI) (EC 5.3.4.1) {Medicago sativa}; isoform
contains non-consensus GA donor splice site at intron 9
Length = 501
Score = 57.6 bits (133), Expect = 4e-09
Identities = 46/139 (33%), Positives = 76/139 (54%), Gaps = 4/139 (2%)
Frame = +1
Query: 4 GPSSKELLTVADFEAFTSKDEVVVVGFFEKESDLKGE-FLKTADKLREEVTFAHSSANEV 180
GP+S E+ + D S +VVVVG F K S + + F+ A+KLR E+ FAH+S ++
Sbjct: 141 GPASAEIKSADDASEVVSDKKVVVVGIFPKLSGSEFDSFMAIAEKLRSELDFAHTSDAKL 200
Query: 181 LEK--TGYKNNVV-LYRPKRLQNKFEDSSVAFDGDTEKVSLKAFIKENYHGLVGVRQKDN 351
L + + VV L++P +F DS FDG+ +L+ F+KE+ L+ V KD
Sbjct: 201 LPRGESSVTGPVVRLFKP--FDEQFVDSK-DFDGE----ALEKFVKESSIPLITVFDKD- 252
Query: 352 IHDFSNPLIVAYYDVDYTK 408
++P ++ +++ TK
Sbjct: 253 --PNNHPYVIKFFESTNTK 269
>At1g77510.1 68414.m09026 protein disulfide isomerase, putative
similar to protein disulfide isomerase precursor
GB:P29828 GI:4704766 [Medicago sativa]; Pfam HMM hit:
PF00085 Thioredoxins
Length = 508
Score = 41.5 bits (93), Expect = 3e-04
Identities = 39/143 (27%), Positives = 63/143 (44%), Gaps = 1/143 (0%)
Frame = +1
Query: 4 GPSSKELLTVADFEAFTSKDEVVVVGFFEKES-DLKGEFLKTADKLREEVTFAHSSANEV 180
GP+S E+ + + VV VG F K S D F+ A+KLR + FAH+ +
Sbjct: 140 GPASVEIKSADSATEVVGEKNVVAVGVFPKLSGDEFDSFMALAEKLRADYDFAHTLDAKF 199
Query: 181 LEKTGYKNNVVLYRPKRLQNKFEDSSVAFDGDTEKVSLKAFIKENYHGLVGVRQKDNIHD 360
L + + K F DS F+G+ +L+ F+KE+ LV V D
Sbjct: 200 LPRGESVEGPAVRLFKPFDELFVDSK-DFNGE----ALEKFVKESSIPLVTVFDSD---P 251
Query: 361 FSNPLIVAYYDVDYTKNPKGTNY 429
++P + +++ TK N+
Sbjct: 252 NNHPYVAKFFESPATKAMMFVNF 274
>At3g22360.1 68416.m02823 alternative oxidase 1b, mitochondrial
(AOX1B) identical to GB:O23913 [SP|O23913] from
[Arabidopsis thaliana]
Length = 325
Score = 29.9 bits (64), Expect = 0.84
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +2
Query: 164 LQPMKFLKKPDTKTMWSCIVPSDSRTSLKTLLLPSTETPRKCHSKLS 304
++PMK K+ T+ WSC P ++ S T+ L P KL+
Sbjct: 81 VKPMKITKEDGTEWKWSCFRPWETYKSDLTIDLKKHHVPSTLPDKLA 127
>At2g14520.1 68415.m01625 CBS domain-containing protein contains
Pfam profiles PF00571: CBS domain, PF01595: Domain of
unknown function
Length = 423
Score = 29.9 bits (64), Expect = 0.84
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Frame = +1
Query: 292 LKAFIKENYHGLVGVRQKDNIH-----DFSNPLI-VAYYDVDYTKNPKGTNYWRNRVLK 450
L F K + H V VRQ D IH D +N + DVDY ++P+ T R R L+
Sbjct: 292 LNEFQKGHSHMAVVVRQCDKIHPLQSNDAANETVNEVRVDVDYERSPQETKLKRRRSLQ 350
>At2g42070.1 68415.m05202 MutT/nudix family protein similar to
SP|Q58549 ADP-ribose pyrophosphatase (EC 3.6.1.13)
{Methanococcus jannaschii}; contains Pfam profile
PF00293: NUDIX domain
Length = 280
Score = 29.1 bits (62), Expect = 1.5
Identities = 17/32 (53%), Positives = 22/32 (68%)
Frame = -2
Query: 152 VTSSLNLSAVLRNSPFRSDSFSKNPTTTTSSL 57
++SSLNLS+V +SP R FS PT +SSL
Sbjct: 32 ISSSLNLSSVTSSSPRR--IFSFKPTRMSSSL 61
>At4g33320.1 68417.m04739 expressed protein contains Pfam profile
PF04859: Plant protein of unknown function (DUF641
Length = 292
Score = 28.3 bits (60), Expect = 2.6
Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 4/112 (3%)
Frame = +1
Query: 88 EKESDLKGEFLKTADKLREEVTFAHSSANEVLEKTGYKNNVVLYRPKRLQNKFEDSSVAF 267
E++S LK + K + E+ S ++L+K N L K L+ + ++
Sbjct: 89 EQQSLLKTYYEVMVKKFQSEIQNKDSEITQMLQKIEEANKKRLKLEKNLKLRGMSTNEGS 148
Query: 268 DGDTEKVSLKAFIKENYHGLVGVRQKDNIHDFSNPLI----VAYYDVDYTKN 411
GD + E + V K +HDFS PLI A +D+D N
Sbjct: 149 GGDGN-LQFPDLTTELFVSTYEVAAKA-VHDFSKPLINMMKAAGWDLDSAAN 198
>At4g22190.1 68417.m03208 expressed protein
Length = 387
Score = 27.9 bits (59), Expect = 3.4
Identities = 24/65 (36%), Positives = 32/65 (49%)
Frame = +2
Query: 113 SSLKQLTN*GRRLLLLILQPMKFLKKPDTKTMWSCIVPSDSRTSLKTLLLPSTETPRKCH 292
SS LTN LLL+L+P K L + TM DS TS+++ LP T +P
Sbjct: 18 SSFLSLTNSLIYYLLLLLRPSKTLSLSLSSTM-------DSPTSIRSKPLPETLSPCGSQ 70
Query: 293 SKLSS 307
+ SS
Sbjct: 71 RRRSS 75
>At3g27620.1 68416.m03450 alternative oxidase 1c, mitochondrial
(AOX1C) identical to alternative oxidase 1c precursor
GB:O22048 [SP|O22048] from [Arabidopsis thaliana]
Length = 329
Score = 27.9 bits (59), Expect = 3.4
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +2
Query: 164 LQPMKFLKKPDTKTMWSCIVPSDSRTSLKTLLLPSTETPRKCHSKLS 304
++PMK K+ T+ WSC P ++ + T+ L P K++
Sbjct: 85 VKPMKITKEDGTEWKWSCFRPWETYKADLTIDLKKHHVPSTLPDKIA 131
>At1g72890.1 68414.m08431 disease resistance protein (TIR-NBS
class), putative domain signature TIR-NBS exists,
suggestive of a disease resistance protein.
Length = 438
Score = 27.5 bits (58), Expect = 4.5
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Frame = +1
Query: 244 FEDSSVAFDGDTEKVSLKAFIKE--NYHGLVGVRQ 342
+ED S DG TEK+S K F ++ N + L+G+ Q
Sbjct: 184 WEDDSKLVDGITEKISTKLFSEKPRNDNILIGIDQ 218
>At1g08060.2 68414.m00881 MOM1 identical to MOM1 (mutation in a
'Morpheus molecule') [Arabidopsis thaliana]
gi|8132770|gb|AAF73381.1|
Length = 2001
Score = 27.5 bits (58), Expect = 4.5
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -2
Query: 257 EESSNLFWSRLGRYKTTLFLYP 192
EES N+FWS+L K ++ YP
Sbjct: 807 EESPNIFWSKLLGGKNPMWKYP 828
>At1g08060.1 68414.m00880 MOM1 identical to MOM1 (mutation in a
'Morpheus molecule') [Arabidopsis thaliana]
gi|8132770|gb|AAF73381.1|
Length = 2001
Score = 27.5 bits (58), Expect = 4.5
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -2
Query: 257 EESSNLFWSRLGRYKTTLFLYP 192
EES N+FWS+L K ++ YP
Sbjct: 807 EESPNIFWSKLLGGKNPMWKYP 828
>At4g18640.1 68417.m02759 leucine-rich repeat transmembrane protein
kinase, putative
Length = 686
Score = 27.1 bits (57), Expect = 5.9
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -2
Query: 326 RP**FSLMKALSDTFSVSPSKATEESSNLFWSRL 225
RP + + L +++P KAT SS L+W+ L
Sbjct: 645 RPSMKDVAEQLKQVINITPEKATPRSSPLWWAEL 678
>At3g28980.1 68416.m03622 expressed protein
Length = 445
Score = 27.1 bits (57), Expect = 5.9
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +1
Query: 7 PSSKELLTVADFEAFTSKDEVVVVGFFEKESDLKGEFLKTADKLR 141
P ++ TV D E +T K +V V EKE +F +KLR
Sbjct: 34 PQIEDPKTVKDVEPYTVKVVMVFVADLEKECPKTNKFKAFFEKLR 78
>At1g61970.1 68414.m06990 mitochondrial transcription termination
factor-related / mTERF-related contains Pfam profile
PF02536: mTERF
Length = 418
Score = 27.1 bits (57), Expect = 5.9
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +1
Query: 88 EKESDLKGEFLKTADKLREEVTFAHSSANEVLEKTGYKNNVVLY 219
EK K +FL++ E+T SS E+L K G+K V Y
Sbjct: 117 EKSLGPKLQFLQSRGASSSEITEIVSSVPEILGKKGHKTISVYY 160
>At1g54130.1 68414.m06171 RelA/SpoT protein, putative (RSH3)
identical to RSH3 (RelA/SpoT homolog) GI:7141308 from
[Arabidopsis thaliana]; contains Pfam profiles PF01966:
HD domain, PF04607: Region found in RelA / SpoT proteins
Length = 712
Score = 27.1 bits (57), Expect = 5.9
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +1
Query: 7 PSSKELLTVADFEAFTSKDEVVVVGFFEKESDLKGEFLKTAD 132
P +++LL A + +DE V+ F+E E +G+ T D
Sbjct: 194 PYARDLLRRAQLKHKIFEDESVIKAFYEAEKAHRGQMRATGD 235
>At2g20720.1 68415.m02433 pentatricopeptide (PPR) repeat-containing
protein contains Pfam TIGR00756: pentatricopeptide
repeat domain
Length = 299
Score = 26.6 bits (56), Expect = 7.8
Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 9/123 (7%)
Frame = +1
Query: 10 SSKELLTVADFEAFTSKDEVVVVG-----FFEKESDLKGEFL-KTADKLREEVTFAHSSA 171
S ++ V E F SK EV++ +F ++ F+ K LR TF
Sbjct: 41 SMASVVDVQGVEKFLSKWEVMIQDKWTTFYFPGLVYIRAGFMEKGLALLRRSETFVDDGC 100
Query: 172 NEVLE---KTGYKNNVVLYRPKRLQNKFEDSSVAFDGDTEKVSLKAFIKENYHGLVGVRQ 342
E++ T Y N + RL N +D ++FD +KAF K+ L GV +
Sbjct: 101 REIIYGCLMTVYCNENLTEDVYRLWNLAKDYGISFDSSRCSDIVKAFTKKG--DLDGVME 158
Query: 343 KDN 351
+ N
Sbjct: 159 EWN 161
>At1g67500.1 68414.m07688 DNA polymerase family B protein similar to
SP|Q61493 DNA polymerase zeta catalytic subunit (EC
2.7.7.7) {Mus musculus}; contains Pfam profile PF00136:
DNA polymerase family B
Length = 1890
Score = 26.6 bits (56), Expect = 7.8
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -2
Query: 158 AKVTSSLNLSAVLRNSPFRSDSFSKNPTTTTSSLEVKAS 42
AK T+S N VLRN + F K+P T S V ++
Sbjct: 751 AKETASQNSDEVLRNLSSTTVPFGKDPQTVESGTLVSSN 789
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.314 0.133 0.376
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,785,199
Number of Sequences: 28952
Number of extensions: 196557
Number of successful extensions: 610
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 742437000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
- SilkBase 1999-2023 -