Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30251
(571 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16687| Best HMM Match : No HMM Matches (HMM E-Value=.) 154 6e-38
SB_10000| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0) 79 3e-15
SB_29025| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 7e-05
SB_54467| Best HMM Match : GLTT (HMM E-Value=0.52) 32 0.38
SB_43138| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.3e-14) 30 1.5
SB_39302| Best HMM Match : SH3_2 (HMM E-Value=1.9e-38) 29 2.0
SB_27288| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_58702| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.059) 28 6.2
SB_53601| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.2
SB_31426| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.2
>SB_16687| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 407
Score = 154 bits (373), Expect = 6e-38
Identities = 73/108 (67%), Positives = 89/108 (82%), Gaps = 2/108 (1%)
Frame = +1
Query: 226 RYYSS--LPSHIKVNLPALSPTMESGSIVSWEKKEGDKLSEGDLLCEIETDKATMGFETP 399
R YSS P+H KV LPALSPTME+G++VSWEK+EGD+L+EGDLL +IETDKATM FETP
Sbjct: 59 RLYSSDGYPTHTKVPLPALSPTMEAGTLVSWEKQEGDELAEGDLLAQIETDKATMEFETP 118
Query: 400 EEGYLAKILIPAGTKGVPVGKLLCIIVGDQNDVAAFKDFKDDSSPATP 543
EEG++AKILIPAG+K VP+GKLLCIIV ++ DV FK+F D + P
Sbjct: 119 EEGFIAKILIPAGSKDVPIGKLLCIIVPNKEDVDKFKNFTVDDAEGIP 166
>SB_10000| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0)
Length = 382
Score = 78.6 bits (185), Expect = 3e-15
Identities = 35/52 (67%), Positives = 42/52 (80%)
Frame = +1
Query: 286 MESGSIVSWEKKEGDKLSEGDLLCEIETDKATMGFETPEEGYLAKILIPAGT 441
ME+G+IVSW KKEGD + GD LCEIETDKAT+ +T E+G LAKI+IP GT
Sbjct: 1 METGTIVSWLKKEGDTIEPGDALCEIETDKATLTLDTDEQGVLAKIVIPPGT 52
>SB_29025| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 431
Score = 44.4 bits (100), Expect = 7e-05
Identities = 28/102 (27%), Positives = 50/102 (49%)
Frame = +1
Query: 250 HIKVNLPALSPTMESGSIVSWEKKEGDKLSEGDLLCEIETDKATMGFETPEEGYLAKILI 429
++ VN P + ++ G I W++ GD ++E +++ EIETDK ++ P G + ++ +
Sbjct: 47 YVVVNTPPFAESVTEGDI-RWDQAVGDAVAEDEVVGEIETDKTSIPVTAPANGVIEELFV 105
Query: 430 PAGTKGVPVGKLLCIIVGDQNDVAAFKDFKDDSSPATPQKRA 555
G K V G+ L + K+ S+P P K A
Sbjct: 106 ADGDK-VEKGQQLFKL--KLTGALPKKEAAASSTPPPPAKEA 144
>SB_54467| Best HMM Match : GLTT (HMM E-Value=0.52)
Length = 353
Score = 31.9 bits (69), Expect = 0.38
Identities = 17/32 (53%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +3
Query: 204 TTMDCSDEVLFESTITYKGQPSSSFANHG-EW 296
TTMDC D L ST+ Y G P S A+HG +W
Sbjct: 214 TTMDCHDFPL--STMAYHGLPYYSMASHGSQW 243
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +3
Query: 207 TMDCSDEVLFESTITYKGQPSSSFANHG 290
TMDC D L +T+ Y G P S A+HG
Sbjct: 321 TMDCHDLPL--TTMAYHGLPHYSMASHG 346
>SB_43138| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.3e-14)
Length = 1709
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 76 ILSDGLKKAIRSNITRCISTELAKRKVTNKLLEYTQN 186
++ D L K + S I+ C E AKR + N+L E ++
Sbjct: 816 VIVDDLSKQLESYISNCAELEEAKRAMDNRLTEKVES 852
>SB_39302| Best HMM Match : SH3_2 (HMM E-Value=1.9e-38)
Length = 2084
Score = 29.5 bits (63), Expect = 2.0
Identities = 26/116 (22%), Positives = 47/116 (40%)
Frame = +1
Query: 208 QWTVQMRYYSSLPSHIKVNLPALSPTMESGSIVSWEKKEGDKLSEGDLLCEIETDKATMG 387
+W +M L S I V+ +S S +VS + S+ E + +K +
Sbjct: 1162 RWVTRMLVSRMLVSPISVSRMLVSRLSVSRMLVSLKNINDRNTSQSSKWLERKDEKG-LR 1220
Query: 388 FETPEEGYLAKILIPAGTKGVPVGKLLCIIVGDQNDVAAFKDFKDDSSPATPQKRA 555
T + L +L+ ++ + G ++ G+ NDVA K+D P +A
Sbjct: 1221 LLTLKCLLLVHLLLKTNSREIKPGLRFLVVCGEANDVADLTRQKEDLELQIPTLKA 1276
>SB_27288| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 458
Score = 29.5 bits (63), Expect = 2.0
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Frame = +1
Query: 301 IVSWEKKEG-DKLSEGDLLCEIETDKATMGFETPEEGYLAKILIPAGTKGVPVGKLLCII 477
++++++++G + E D E E FET E + +PA GV +G+ I
Sbjct: 24 VINFKRRQGLREYEEEDDEEETEQTSVATVFETSLE-----LKVPASVSGVIIGRGGANI 78
Query: 478 VGDQNDVAAFKDFKDDSSP 534
Q + + +FKDD P
Sbjct: 79 KKIQKETGTYINFKDDDEP 97
>SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1913
Score = 29.1 bits (62), Expect = 2.7
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +1
Query: 136 ELAKRKVTNKLLEYTQN--QAVLSVPQWTVQMRYYSSLP 246
+L RK+ K E TQN A+L P T ++YY +LP
Sbjct: 1668 KLGTRKIGGKKDESTQNGGPALLPKPTHTFMVKYYGALP 1706
>SB_58702| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.059)
Length = 765
Score = 27.9 bits (59), Expect = 6.2
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Frame = +1
Query: 196 LSVPQWTVQMRYYSSLPSH---IKVNLPALSPTMESGSIVSWEKK 321
L VP M Y +PS + N P+LSPT ES + +W +K
Sbjct: 534 LHVPSSPYVM-YQPGVPSERSALMRNTPSLSPTSESAMLQNWRQK 577
>SB_53601| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 555
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 292 SGSIVSWEKKEGDKLSEGDLLCEIETDK 375
+G ++ K GD ++EGD++ +IE K
Sbjct: 526 TGKVIKVNYKAGDNVAEGDIMVQIEPVK 553
>SB_31426| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 89
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/32 (43%), Positives = 14/32 (43%)
Frame = +1
Query: 310 WEKKEGDKLSEGDLLCEIETDKATMGFETPEE 405
W KEGD SE C IE D E P E
Sbjct: 32 WYGKEGDVASEEHEECLIEDDAIIYNHENPHE 63
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,916,458
Number of Sequences: 59808
Number of extensions: 374331
Number of successful extensions: 935
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1349364063
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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