Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30251
         (571 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced prot...    23   2.8  
DQ325075-1|ABD14089.1|  181|Apis mellifera complementary sex det...    21   6.5  
DQ325074-1|ABD14088.1|  181|Apis mellifera complementary sex det...    21   6.5  
DQ325073-1|ABD14087.1|  181|Apis mellifera complementary sex det...    21   6.5  
DQ325072-1|ABD14086.1|  181|Apis mellifera complementary sex det...    21   6.5  
DQ325071-1|ABD14085.1|  181|Apis mellifera complementary sex det...    21   6.5  
DQ325070-1|ABD14084.1|  181|Apis mellifera complementary sex det...    21   6.5  
DQ325069-1|ABD14083.1|  181|Apis mellifera complementary sex det...    21   6.5  
DQ325068-1|ABD14082.1|  181|Apis mellifera complementary sex det...    21   6.5  
AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex det...    21   6.5  
AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex det...    21   6.5  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   6.5  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   8.6  

>AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 36

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +1

Query: 229 YYSSLPSHIKVNLPALSPTMES 294
           + + LP H+  N+P +  T+ S
Sbjct: 6   HVAQLPHHLSPNMPTMDSTVSS 27


>DQ325075-1|ABD14089.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 7/34 (20%), Positives = 19/34 (55%)
 Frame = +3

Query: 27  LVKNIDNVANNCVTESNLKRWS*ESYTVEYYEVH 128
           ++ N ++++NN    +N   ++  +Y   YY ++
Sbjct: 81  IISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNIN 114


>DQ325074-1|ABD14088.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 7/34 (20%), Positives = 19/34 (55%)
 Frame = +3

Query: 27  LVKNIDNVANNCVTESNLKRWS*ESYTVEYYEVH 128
           ++ N ++++NN    +N   ++  +Y   YY ++
Sbjct: 81  IISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNIN 114


>DQ325073-1|ABD14087.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 7/34 (20%), Positives = 19/34 (55%)
 Frame = +3

Query: 27  LVKNIDNVANNCVTESNLKRWS*ESYTVEYYEVH 128
           ++ N ++++NN    +N   ++  +Y   YY ++
Sbjct: 81  IISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNIN 114


>DQ325072-1|ABD14086.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 7/34 (20%), Positives = 19/34 (55%)
 Frame = +3

Query: 27  LVKNIDNVANNCVTESNLKRWS*ESYTVEYYEVH 128
           ++ N ++++NN    +N   ++  +Y   YY ++
Sbjct: 81  IISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNIN 114


>DQ325071-1|ABD14085.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 7/34 (20%), Positives = 19/34 (55%)
 Frame = +3

Query: 27  LVKNIDNVANNCVTESNLKRWS*ESYTVEYYEVH 128
           ++ N ++++NN    +N   ++  +Y   YY ++
Sbjct: 81  IISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNIN 114


>DQ325070-1|ABD14084.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 7/34 (20%), Positives = 19/34 (55%)
 Frame = +3

Query: 27  LVKNIDNVANNCVTESNLKRWS*ESYTVEYYEVH 128
           ++ N ++++NN    +N   ++  +Y   YY ++
Sbjct: 81  IISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNIN 114


>DQ325069-1|ABD14083.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 7/34 (20%), Positives = 19/34 (55%)
 Frame = +3

Query: 27  LVKNIDNVANNCVTESNLKRWS*ESYTVEYYEVH 128
           ++ N ++++NN    +N   ++  +Y   YY ++
Sbjct: 81  IISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNIN 114


>DQ325068-1|ABD14082.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 7/34 (20%), Positives = 19/34 (55%)
 Frame = +3

Query: 27  LVKNIDNVANNCVTESNLKRWS*ESYTVEYYEVH 128
           ++ N ++++NN    +N   ++  +Y   YY ++
Sbjct: 81  IISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNIN 114


>AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 7/34 (20%), Positives = 19/34 (55%)
 Frame = +3

Query: 27  LVKNIDNVANNCVTESNLKRWS*ESYTVEYYEVH 128
           ++ N ++++NN    +N   ++  +Y   YY ++
Sbjct: 314 IISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNIN 347


>AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 7/34 (20%), Positives = 19/34 (55%)
 Frame = +3

Query: 27  LVKNIDNVANNCVTESNLKRWS*ESYTVEYYEVH 128
           ++ N ++++NN    +N   ++  +Y   YY ++
Sbjct: 314 IISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNIN 347


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +2

Query: 479 LEIRMMLRHSKISKMTHHLQHLK 547
           LEI++     +++ M HHL   K
Sbjct: 326 LEIQLQKERDRLTAMMHHLHVAK 348


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 11/39 (28%), Positives = 16/39 (41%)
 Frame = +1

Query: 151 KVTNKLLEYTQNQAVLSVPQWTVQMRYYSSLPSHIKVNL 267
           K+   L E+  N     + QW     +   +PSHI   L
Sbjct: 607 KLQIALSEFVINPHQQHLDQWNWVYEWKELIPSHIMAGL 645


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,149
Number of Sequences: 438
Number of extensions: 3567
Number of successful extensions: 15
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16381902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)