Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30245
         (594 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0020 + 13837257-13837281,13837364-13837550,13837655-138377...    29   3.7  

>09_04_0020 +
           13837257-13837281,13837364-13837550,13837655-13837727,
           13837769-13837804,13838161-13838281,13838399-13838472,
           13838594-13838730,13839262-13839325,13839693-13839758,
           13840061-13840130,13840206-13840310,13840840-13840981,
           13841343-13841439,13841939-13842460
          Length = 572

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 385 THKSIVTKYNLFFAFKYKHVCHFLKS 462
           T + I   Y +   F +KHVCHF +S
Sbjct: 301 TSQKIKNSYTVHNPFDFKHVCHFERS 326


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,527,159
Number of Sequences: 37544
Number of extensions: 168888
Number of successful extensions: 317
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 317
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)