Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30245
         (594 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g02660.1 68417.m00361 WD-40 repeat family protein / beige-rel...    28   4.1  
At4g23140.2 68417.m03338 receptor-like protein kinase 5 (RLK5) i...    27   9.4  
At4g23140.1 68417.m03337 receptor-like protein kinase 5 (RLK5) i...    27   9.4  
At4g05080.1 68417.m00754 F-box family protein contains Pfam PF00...    27   9.4  

>At4g02660.1 68417.m00361 WD-40 repeat family protein /
           beige-related contains Pfam PF00400: WD domain, G-beta
           repeat; similar to BEIGE (GI:3928547) [Rattus
           norvegicus]; lysosomal trafficking regulator - Bos
           taurus, EMBL: AF114785
          Length = 3471

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = -2

Query: 146 NENYLVALIKLFQSLYKLIKI*ICNSRVN 60
           +E++L+  IKLF+ L +LI   +C + +N
Sbjct: 826 DESHLMVYIKLFKHLLRLITTAVCENAIN 854


>At4g23140.2 68417.m03338 receptor-like protein kinase 5 (RLK5)
           identical to receptor-like protein kinase 5 [Arabidopsis
           thaliana] GI:13506747; contains Pfam domain PF00069:
           Protein kinase domain; identical to cDNA receptor-like
           protein kinase 5 (RLK5) GI:13506746
          Length = 680

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 205 YTIYCL*YQRNKNLKVKHIHNKQEIIISFTNNCSPN 312
           Y   C+    +KN+    I N+ E I+S TN  SPN
Sbjct: 119 YYEQCILRYSHKNILSTAITNEGEFILSNTNTISPN 154


>At4g23140.1 68417.m03337 receptor-like protein kinase 5 (RLK5)
           identical to receptor-like protein kinase 5 [Arabidopsis
           thaliana] GI:13506747; contains Pfam domain PF00069:
           Protein kinase domain; identical to cDNA receptor-like
           protein kinase 5 (RLK5) GI:13506746
          Length = 674

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 205 YTIYCL*YQRNKNLKVKHIHNKQEIIISFTNNCSPN 312
           Y   C+    +KN+    I N+ E I+S TN  SPN
Sbjct: 119 YYEQCILRYSHKNILSTAITNEGEFILSNTNTISPN 154


>At4g05080.1 68417.m00754 F-box family protein contains Pfam
           PF00646: F-box domain; contains TIGRFAM TIGR01640 :
           F-box protein interaction domain
          Length = 391

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +1

Query: 202 LYTIYCL*YQRNKNLKV-KHIHNKQ 273
           +Y+ +CL Y  NKN K+ + + NKQ
Sbjct: 137 MYSTFCLRYDNNKNHKILRFLDNKQ 161


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,588,435
Number of Sequences: 28952
Number of extensions: 166721
Number of successful extensions: 269
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 269
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)