Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30243
(647 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c... 27 1.8
SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|... 27 3.1
SPBC409.08 |||spermine family transporter |Schizosaccharomyces p... 27 3.1
SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit Swd2|Schizosa... 27 3.1
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p... 26 4.1
SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl... 26 4.1
SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p... 26 4.1
SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 5.4
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 25 7.1
SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces pom... 25 7.1
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch... 25 9.4
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos... 25 9.4
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 25 9.4
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 25 9.4
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa... 25 9.4
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ... 25 9.4
SPAC1142.06 |get3||GET complex ATPase subunit Get3 |Schizosaccha... 25 9.4
>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 367
Score = 27.5 bits (58), Expect = 1.8
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -2
Query: 355 KRDVGIISNNSSEHLSFKNEIHNR 284
KR +G+ N + +FKNE+ NR
Sbjct: 40 KRSIGVTENGNDSPEAFKNELDNR 63
>SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 712
Score = 26.6 bits (56), Expect = 3.1
Identities = 15/54 (27%), Positives = 21/54 (38%)
Frame = -2
Query: 268 PSLLHPKNVVAIKDSLISFIYRLTSPREGEGARRGDTHSNSHIHTSPYKGNTTY 107
P+ LHP + + L+S R G + HIH +PYK Y
Sbjct: 530 PNKLHPYSGKPVSYKLVSRETPRLMARPGSLVSNRAGFARHHIHVTPYKDGQIY 583
>SPBC409.08 |||spermine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 539
Score = 26.6 bits (56), Expect = 3.1
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = -2
Query: 397 YG*TLLRWRAMRW*KRDVG--IISNNSSEHLSFKNEIHNRMSYIFPSLLHPKNVVAIKDS 224
Y LLRWRA R +++ G + + + LSFK + ++ LL +V I
Sbjct: 281 YAPVLLRWRAQRI-RKETGRQVFTAQEKQMLSFKEIVQVNLTRPLTLLLTEPILVCI-SG 338
Query: 223 LISFIYRL 200
I+ IY L
Sbjct: 339 YIALIYAL 346
>SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit
Swd2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 357
Score = 26.6 bits (56), Expect = 3.1
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -2
Query: 214 FIYRLTSPREGEGARRGDTHSNSHIHTSPYKGNTTYF 104
F+ L S + G R HSNS IH S + NT +
Sbjct: 60 FVKSLASKKYGAHLGRFTHHSNSLIHASTKEDNTVRY 96
>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1033
Score = 26.2 bits (55), Expect = 4.1
Identities = 12/53 (22%), Positives = 23/53 (43%)
Frame = -3
Query: 441 SGNALWMTAVAPRSSMDELYSGGGRCDGKSEMSVSSRTIPQSTCRSRTKYITG 283
+G +L + + +YSG G S+ +S RT+ + + +Y G
Sbjct: 417 TGRSLSLKLLQQLREQSRIYSGSGNNKSDSQSHISGRTLKEISLDEPIRYAMG 469
>SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 26.2 bits (55), Expect = 4.1
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = -2
Query: 337 ISN-NSSEHLSFKNEIHNRMSYIFPSLLHPKNVVAIKDSL 221
+SN N+ + LSF + N Y + +LLHP+N + ++ +
Sbjct: 454 LSNFNTCDSLSFSS---NNSLYGYSTLLHPRNPICVRQRI 490
>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 417
Score = 26.2 bits (55), Expect = 4.1
Identities = 16/70 (22%), Positives = 25/70 (35%), Gaps = 3/70 (4%)
Frame = -3
Query: 489 WRGAHSIAGWYVAKK---ISGNALWMTAVAPRSSMDELYSGGGRCDGKSEMSVSSRTIPQ 319
W G + A +YV K W T+ + L G G DG + +S+S +
Sbjct: 309 WEGKGTSAQYYVNKAGYTAEQGCQWGTSSGDYGNWSPLVFGAGMTDGTTWLSISQNPLTS 368
Query: 318 STCRSRTKYI 289
K +
Sbjct: 369 QLANYNVKIV 378
>SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 390
Score = 25.8 bits (54), Expect = 5.4
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -3
Query: 609 LPSPMNFSNARGRAKPAAYRLI 544
LP P+N+S+ R R+ Y+LI
Sbjct: 368 LPIPINYSSLRSRSSSKPYQLI 389
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 25.4 bits (53), Expect = 7.1
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = -2
Query: 337 ISNNSSEHLSFKNEIHNRMSYIFPSLLHPKNVVAIKDSLISFI 209
IS+N E LSF SY P LH V ++KD +
Sbjct: 1038 ISSNLVESLSFDKIREEVTSYKAPDGLHDFGVYSLKDEYYDLV 1080
>SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 25.4 bits (53), Expect = 7.1
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = -2
Query: 175 ARRGDTHSNSHIHTSPYKGNTTYFFSNNKI 86
+RR + ++ SHI S + TY+++NN++
Sbjct: 357 SRRNENYA-SHIPRSTSENTGTYYYANNRL 385
>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
cytochrome c oxidase assembly protein Cox1101,
mitochondrial ribosomal protein
Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 753
Score = 25.0 bits (52), Expect = 9.4
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +3
Query: 27 SQTKYLYDKTNYVCVCVYLFILLLEKKYVVFPLYGLVC 140
S+ K+ Y++ + V + I L Y PLY L C
Sbjct: 559 SRDKFHYNQRTTIYYLVAISIFALGLTYAAVPLYRLFC 596
>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 731
Score = 25.0 bits (52), Expect = 9.4
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = -2
Query: 190 REGEGARRGDTHSNSHIHTSPYKGNTTYFFSN--NKINK*TH 71
R R+G S+S++ +SP GN+ F+ N +++ TH
Sbjct: 570 RSANMIRQGANGSDSNMSSSPVSGNSNTPFNKFPNSVSRNTH 611
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 25.0 bits (52), Expect = 9.4
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Frame = +1
Query: 397 TTTWSHCGHP-QCVSRDLFCH-VPSGYGMSSPPR 492
TTT GH Q S H +P G+SSPPR
Sbjct: 967 TTTVDEDGHQEQTTSTTKVAHPIPVSNGLSSPPR 1000
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 25.0 bits (52), Expect = 9.4
Identities = 17/59 (28%), Positives = 23/59 (38%)
Frame = +3
Query: 222 NESLIATTFFGCKSDGKI*LIRLCISFLNDKCSEELFEMIPTSRFYHRIARHRSRVHPY 398
++ L FF S KI L S LN CS+ + + H H + HPY
Sbjct: 167 DDDLARLLFFMINS--KITNYDLPFSILNSPCSDLCLNSSSLANYLHGCFYHNTLSHPY 223
>SPCC550.03c |||RNA helicase involved in mRNA
catabolism|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1213
Score = 25.0 bits (52), Expect = 9.4
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +3
Query: 396 YYYVEPLRSSTVRFQRSFLPRTIRLWNELPSTV 494
Y Y E L + +RFQR L I + E+P +
Sbjct: 75 YEYPETLARTQIRFQRHGLEGKIMGYKEVPELI 107
>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
cytochrome c oxidase assembly protein Cox1102,
mitochondrial ribosomal protein
Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
Length = 753
Score = 25.0 bits (52), Expect = 9.4
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +3
Query: 27 SQTKYLYDKTNYVCVCVYLFILLLEKKYVVFPLYGLVC 140
S+ K+ Y++ + V + I L Y PLY L C
Sbjct: 559 SRDKFHYNQRTTIYYLVAISIFALGLTYAAVPLYRLFC 596
>SPAC1142.06 |get3||GET complex ATPase subunit Get3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 329
Score = 25.0 bits (52), Expect = 9.4
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +3
Query: 48 DKTNYVCVCVYLFILLLEKKYVV 116
D T +VCVC+ F+ L E + ++
Sbjct: 220 DLTTFVCVCISEFLSLYETERMI 242
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,936,514
Number of Sequences: 5004
Number of extensions: 65523
Number of successful extensions: 182
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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