Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30243
(647 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0709 + 5315119-5315194,5316068-5316303,5316426-5316578,531... 29 3.2
01_06_0634 + 30746767-30747012,30747083-30747118,30747554-307478... 29 3.2
07_03_0868 - 22157711-22157937,22158112-22158758,22158918-22159570 29 4.2
04_04_0824 - 28399144-28399385,28400193-28400312,28400422-284004... 29 4.2
04_01_0617 - 8076624-8076971,8077761-8077883,8077965-8078035,807... 29 4.2
09_04_0518 - 18261420-18261953,18262054-18262626,18262736-182629... 28 5.6
04_04_0289 + 24167246-24167411,24167584-24167708,24167744-241686... 28 5.6
02_03_0358 - 18081487-18082140 27 9.7
>02_01_0709 +
5315119-5315194,5316068-5316303,5316426-5316578,
5317011-5317091,5317201-5317255,5317710-5318008,
5318053-5318064
Length = 303
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = -1
Query: 611 SYRRP*TSAMPGAEPSPLPTA*YSPQASFEEGRVIALGKHRGG 483
S +RP +A G +PS L P AS ++G+ + K GG
Sbjct: 67 SSKRPPAAAAAGGQPSRLNNPADQPSASGKDGKAAVVKKEGGG 109
>01_06_0634 +
30746767-30747012,30747083-30747118,30747554-30747850,
30748482-30748544,30748643-30748696,30748837-30748854,
30749554-30749625,30749731-30749787,30750160-30750236,
30751013-30751094,30751585-30751701,30752083-30752210,
30753074-30753143,30753725-30753765,30753963-30753990,
30754151-30754210
Length = 481
Score = 29.1 bits (62), Expect = 3.2
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +1
Query: 379 GVEFIHTTTWSHCGHPQCVSRDLFCHVPSGY 471
G+ ++ T +W HCG+ + L HVP Y
Sbjct: 444 GLAYLRTESWVHCGNGMKQAIGLKFHVPEEY 474
>07_03_0868 - 22157711-22157937,22158112-22158758,22158918-22159570
Length = 508
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +3
Query: 285 RLCISFLNDKCSEELFEMIPTSRFYHRIARHRSRVH 392
+LC+ FLN+ C + +E+ + + +A+ +SR H
Sbjct: 262 QLCVWFLNESCGQMNWELKHQTHLWSLLAQLKSREH 297
>04_04_0824 -
28399144-28399385,28400193-28400312,28400422-28400453,
28400531-28400625,28400713-28400786,28400883-28401018,
28401096-28401333,28401508-28401555,28401593-28401780,
28401862-28401983,28402061-28402226,28402321-28402443,
28403068-28403139,28403244-28403351,28404212-28404328,
28404458-28404596,28404702-28404808,28404904-28405013,
28405141-28405274,28405348-28405497,28405571-28405791,
28405868-28406677,28410261-28410473
Length = 1254
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -3
Query: 408 PRSSMDELYSGGGR-CDGKSEMSVSSRTIPQ 319
PR M + Y GG R G+S S SSRT+P+
Sbjct: 211 PRGGMPQPYYGGPRGSGGRSVPSGSSRTVPE 241
>04_01_0617 -
8076624-8076971,8077761-8077883,8077965-8078035,
8078108-8078360,8078613-8078768,8078854-8079770,
8079858-8079927,8082310-8082416,8082722-8082755,
8083621-8083940,8084031-8084820,8084890-8085046,
8085647-8086068
Length = 1255
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = +1
Query: 427 QCVSRDLFCHVPSGYGMSSPPRCFPSAMTRPSSNEACG 540
QCV++D + SPPRC S+ P E G
Sbjct: 107 QCVAKDAAAQPEMSWPRGSPPRCPSSSCPEPQRQEFGG 144
>09_04_0518 -
18261420-18261953,18262054-18262626,18262736-18262948,
18263379-18263510,18263591-18263731,18263899-18264120
Length = 604
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Frame = +3
Query: 402 YVEPLRSSTVRFQRSFLPRTI---RLWNELPSTVFPERYDTSLFKRG 533
Y+EP R++ V + L +TI + W+E T+F +++T LF G
Sbjct: 338 YMEPQRAAFVGVAPATLAQTILQHKRWSEGNFTIFLSKHNTFLFGHG 384
>04_04_0289 +
24167246-24167411,24167584-24167708,24167744-24168694,
24168788-24168940,24169251-24169475,24170102-24170587
Length = 701
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = -2
Query: 349 DVGI-ISNNSSEHLSFKNEIHNRMSYIFPSLLHPKNV 242
DVG+ I N S+++ + ++ + R + SLL PKN+
Sbjct: 72 DVGVGIGNESNDYAAAASQTNRRYGQVVRSLLLPKNI 108
>02_03_0358 - 18081487-18082140
Length = 217
Score = 27.5 bits (58), Expect = 9.7
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = -3
Query: 477 HSIAGWYVAKKISGNALWMTAVAPRSSMD-ELYSGGGRCDGKSEMSVSSRTIPQS 316
HS+ + V ++ S A+ + + P +MD ++Y GGG + + E V + QS
Sbjct: 107 HSLPSFVVEQERS--AVVLLSSLPSFAMDRDVYGGGGEAEAEEEQGVGGKQQQQS 159
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,563,961
Number of Sequences: 37544
Number of extensions: 451315
Number of successful extensions: 1235
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1235
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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