Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30243
         (647 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    25   0.48 
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           25   0.48 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   3.4  
AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced prot...    21   7.8  

>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 109 YFFSNNKINK*THTHT*FVLSYRYFVCE 26
           Y+F +NKI++ T  H   V S R+F+ +
Sbjct: 393 YYFESNKIDETTLKHLIDVASDRFFITD 420


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 109 YFFSNNKINK*THTHT*FVLSYRYFVCE 26
           Y+F +NKI++ T  H   V S R+F+ +
Sbjct: 393 YYFESNKIDETTLKHLIDVASDRFFITD 420


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = -2

Query: 247 NVVAIKDSLISFIYRLTSPREGEGARRGDTHSNSHIHTSPY 125
           N +A  ++L++ +Y    P           H +SHIH +P+
Sbjct: 396 NALASHNNLLNNVYSTPGPHHHTMG-----HGHSHIHATPH 431


>AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 87

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +3

Query: 138 CICELECVSPRLAPSPSRG 194
           C+CE +  +PR   + S G
Sbjct: 3   CLCECDLATPRTGTNCSSG 21


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,975
Number of Sequences: 438
Number of extensions: 4728
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)