Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30243
(647 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g52370.1 68416.m05756 beta-Ig-H3 domain-containing protein / ... 30 1.2
At1g10600.1 68414.m01200 mov34 family protein similar to AMSH [H... 30 1.2
At5g57940.3 68418.m07250 cyclic nucleotide-regulated ion channel... 29 2.0
At5g57940.2 68418.m07249 cyclic nucleotide-regulated ion channel... 29 2.0
At5g57940.1 68418.m07248 cyclic nucleotide-regulated ion channel... 29 2.0
At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical t... 28 4.7
At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical t... 28 4.7
At1g67450.1 68414.m07677 F-box family protein contains Pfam PF00... 28 4.7
At2g35860.1 68415.m04403 beta-Ig-H3 domain-containing protein / ... 28 6.1
At1g50990.1 68414.m05732 protein kinase-related low similarity t... 28 6.1
At4g20730.1 68417.m03013 filament protein-related similar to Cyt... 27 8.1
>At3g52370.1 68416.m05756 beta-Ig-H3 domain-containing protein /
fasciclin domain-containing protein weak similarity to
osteoblast specific factor 2 [Homo sapiens] GI:393319;
contains Pfam profile PF02469: Fasciclin domain;
supporting cDNA gi|26450295|dbj|AK117608.1|
Length = 436
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = -2
Query: 262 LLHPKNVVAIKDSLISFIY--RLTSPREGEGARRGDTHSNSHIHTSPYKGNT 113
LL PKN+ +++ L+ I R+TSP+ T SN H+H + K N+
Sbjct: 91 LLQPKNLKSLQSLLMFHILPKRITSPQFSSAVVSHRTLSNDHLHFTNGKVNS 142
>At1g10600.1 68414.m01200 mov34 family protein similar to AMSH [Homo
sapiens] GI:4098124; contains Pfam profile PF01398:
Mov34/MPN/PAD-1 family
Length = 271
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = -2
Query: 244 VVAIKDSLISF-IYRLTSPREGEGARRGDTHSNSHIHTSPYKGNTTYFFSNN 92
VVA DS S+ I++LT P G RG + + H H P GN Y +N
Sbjct: 158 VVAPTDSSKSYGIFKLTDPG-GMEVLRGCSETGFHPHKEPEDGNPVYEHCSN 208
>At5g57940.3 68418.m07250 cyclic nucleotide-regulated ion channel /
cyclic nucleotide-gated channel (CNGC5) identical to
cyclic nucleotide and calmodulin-regulated ion channel
(cngc5) GI:4581205 from [Arabidopsis thaliana]
Length = 710
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Frame = -3
Query: 468 AGWYVAKKISGNALWMTAV--APRSSMDELYSGGGRCDGKSEMSVSSRTIPQSTCRS 304
A WY+ +A W A A S D LY G DG + + + ++ +S CR+
Sbjct: 272 AFWYLLALERNDACWQEACIDAGNCSTDFLYCGNQNMDGYAVWNRAKESVLKSKCRA 328
>At5g57940.2 68418.m07249 cyclic nucleotide-regulated ion channel /
cyclic nucleotide-gated channel (CNGC5) identical to
cyclic nucleotide and calmodulin-regulated ion channel
(cngc5) GI:4581205 from [Arabidopsis thaliana]
Length = 717
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Frame = -3
Query: 468 AGWYVAKKISGNALWMTAV--APRSSMDELYSGGGRCDGKSEMSVSSRTIPQSTCRS 304
A WY+ +A W A A S D LY G DG + + + ++ +S CR+
Sbjct: 279 AFWYLLALERNDACWQEACIDAGNCSTDFLYCGNQNMDGYAVWNRAKESVLKSKCRA 335
>At5g57940.1 68418.m07248 cyclic nucleotide-regulated ion channel /
cyclic nucleotide-gated channel (CNGC5) identical to
cyclic nucleotide and calmodulin-regulated ion channel
(cngc5) GI:4581205 from [Arabidopsis thaliana]
Length = 717
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Frame = -3
Query: 468 AGWYVAKKISGNALWMTAV--APRSSMDELYSGGGRCDGKSEMSVSSRTIPQSTCRS 304
A WY+ +A W A A S D LY G DG + + + ++ +S CR+
Sbjct: 279 AFWYLLALERNDACWQEACIDAGNCSTDFLYCGNQNMDGYAVWNRAKESVLKSKCRA 335
>At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical to
protodermal factor 1 [Arabidopsis thaliana]
gi|4929130|gb|AAD33869
Length = 306
Score = 28.3 bits (60), Expect = 4.7
Identities = 15/34 (44%), Positives = 16/34 (47%)
Frame = +1
Query: 421 HPQCVSRDLFCHVPSGYGMSSPPRCFPSAMTRPS 522
HP S H PSG SSPP P +T PS
Sbjct: 119 HPSTPSHPTPSHPPSGGYYSSPPPRTPVVVTPPS 152
>At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical to
protodermal factor 1 [Arabidopsis thaliana]
gi|4929130|gb|AAD33869
Length = 306
Score = 28.3 bits (60), Expect = 4.7
Identities = 15/34 (44%), Positives = 16/34 (47%)
Frame = +1
Query: 421 HPQCVSRDLFCHVPSGYGMSSPPRCFPSAMTRPS 522
HP S H PSG SSPP P +T PS
Sbjct: 119 HPSTPSHPTPSHPPSGGYYSSPPPRTPVVVTPPS 152
>At1g67450.1 68414.m07677 F-box family protein contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640 :
F-box protein interaction domain; similar to
hypothetical protein GI:7268472 from [Arabidopsis
thaliana]
Length = 398
Score = 28.3 bits (60), Expect = 4.7
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -2
Query: 163 DTHSNSHIHTSPYKGNTTYFFSNNKINK 80
D H+N ++ KGNT +F+ KI +
Sbjct: 182 DLHTNIYVRDMSIKGNTYFFYRGEKIGE 209
>At2g35860.1 68415.m04403 beta-Ig-H3 domain-containing protein /
fasciclin domain-containing protein contains Pfam
profile PF02469: Fasciclin domain
Length = 445
Score = 27.9 bits (59), Expect = 6.1
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Frame = -2
Query: 295 IHNRMSYIFPS-LLHPKNVVAIKDSLISFIY--RLTSPREGEGARRGDTHSNSHIH 137
+ + +F S LL P+N+ +++ L+ I R+TSP+ + T SN H+H
Sbjct: 83 LERNLDPLFKSFLLEPRNLKSLQSLLMFHILPKRITSPQWPSLSHHHRTLSNDHLH 138
>At1g50990.1 68414.m05732 protein kinase-related low similarity to
SP|Q06548|APKA_ARATH Protein kinase APK1A Arabidopsis
thaliana; contains Pfam profile: PF00069: Eukaryotic
protein kinase domain; contains non-consensus (GC)
splice site at intron 6
Length = 507
Score = 27.9 bits (59), Expect = 6.1
Identities = 17/48 (35%), Positives = 28/48 (58%)
Frame = -2
Query: 280 SYIFPSLLHPKNVVAIKDSLISFIYRLTSPREGEGARRGDTHSNSHIH 137
S++ PS LH K + + D L S R G+GA+RG+ H +++I+
Sbjct: 7 SFLKPSSLHDKKITS--DDL--------SGRRGKGAKRGNRHRHANIN 44
>At4g20730.1 68417.m03013 filament protein-related similar to
Cytadherence high molecular weight protein 2 (SP:P47460)
[Mycoplasma genitalium]; similar to YEAST NUF1
protein (Spindle poly body spacer protein SPC110)
(SP:P32380) {Saccharomyces cerevisiae}; also
SP|Q9UKX2|MYH2_HUMAN Myosin heavy chain, skeletal
muscle, SP|P31732|OV71_ONCVO Muscle cell intermediate
filament protein SP|P12882|MYH1_HUMAN Myosin heavy
chain, skeletal muscle,. SP|Q17107|AV71_ACAVI Muscle
cell intermediate filament protein
Length = 800
Score = 27.5 bits (58), Expect = 8.1
Identities = 18/58 (31%), Positives = 25/58 (43%)
Frame = +3
Query: 396 YYYVEPLRSSTVRFQRSFLPRTIRLWNELPSTVFPERYDTSLFKRGLWRVLSGRQRAW 569
Y+YV R ++R F R R+W E P P F+ L + R+RAW
Sbjct: 266 YFYV---RVDLESYERPFSGRK-RMWTEFPDRYRPSPEFPVEFEGVLEAIFRARRRAW 319
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,376,444
Number of Sequences: 28952
Number of extensions: 345484
Number of successful extensions: 872
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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