Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30241
         (333 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    24   0.36 
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    22   1.9  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    22   1.9  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    22   1.9  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    22   1.9  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    22   1.9  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           22   1.9  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    22   1.9  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   2.6  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   2.6  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    21   4.5  
AF264695-1|AAG13009.1|  100|Tribolium castaneum cephalothorax pr...    20   7.8  
AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    20   7.8  

>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 24.2 bits (50), Expect = 0.36
 Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
 Frame = +2

Query: 11  STTSVKFTSPHPHRS*PP--EVAERSQTTRKKHIGSSPNQIYATSKRLNHQRQHDEKRGQ 184
           STTS   +SP    S     E A  +    K    S+P QIY   KR++  +      G+
Sbjct: 160 STTSQNLSSPASSTSSTSSTEKAGTNNNNSKSSQSSNPPQIYPWMKRVHLGQSTVNANGE 219

Query: 185 R*RQ 196
             RQ
Sbjct: 220 TKRQ 223



 Score = 19.8 bits (39), Expect = 7.8
 Identities = 6/25 (24%), Positives = 11/25 (44%)
 Frame = +3

Query: 63  LKWRNAHKQQGRSTSDRHRTKFMQP 137
           +KW+  HK    +    H + +  P
Sbjct: 273 MKWKKEHKMASMNIVPYHMSPYGHP 297


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 1.9
 Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
 Frame = +2

Query: 11  STTSVKFTSPHPHRS*PP--EVAERSQTTRKKHIGSSPNQIYATSKRLNHQRQHDEKRGQ 184
           ST S   +SP    S     E A  +    K    S+P QIY   KR++  +      G+
Sbjct: 160 STASQNLSSPASSTSSTSSTEKAGTNNNNSKSGQSSNPPQIYPWMKRVHLGQSTVNANGE 219

Query: 185 R*RQ 196
             RQ
Sbjct: 220 TKRQ 223



 Score = 19.8 bits (39), Expect = 7.8
 Identities = 6/25 (24%), Positives = 11/25 (44%)
 Frame = +3

Query: 63  LKWRNAHKQQGRSTSDRHRTKFMQP 137
           +KW+  HK    +    H + +  P
Sbjct: 273 MKWKKEHKMASMNIVPYHMSPYGHP 297


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 21.8 bits (44), Expect = 1.9
 Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
 Frame = +2

Query: 11  STTSVKFTSPHPHRS*PP--EVAERSQTTRKKHIGSSPNQIYATSKRLNHQRQHDEKRGQ 184
           ST S   +SP    S     E A  +    K    S+P QIY   KR++  +      G+
Sbjct: 160 STASQNLSSPASSTSSTSSTEKAGTNNNNSKSGQSSNPPQIYPWMKRVHLGQSTVNANGE 219

Query: 185 R*RQ 196
             RQ
Sbjct: 220 TKRQ 223


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 1.9
 Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
 Frame = +2

Query: 11  STTSVKFTSPHPHRS*PP--EVAERSQTTRKKHIGSSPNQIYATSKRLNHQRQHDEKRGQ 184
           ST S   +SP    S     E A  +    K    S+P QIY   KR++  +      G+
Sbjct: 160 STASQNLSSPASSTSSTSSTEKAGTNNNNSKSGQSSNPPQIYPWMKRVHLGQSTVNANGE 219

Query: 185 R*RQ 196
             RQ
Sbjct: 220 TKRQ 223



 Score = 19.8 bits (39), Expect = 7.8
 Identities = 6/25 (24%), Positives = 11/25 (44%)
 Frame = +3

Query: 63  LKWRNAHKQQGRSTSDRHRTKFMQP 137
           +KW+  HK    +    H + +  P
Sbjct: 273 MKWKKEHKMASMNIVPYHMSPYGHP 297


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 21.8 bits (44), Expect = 1.9
 Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
 Frame = +2

Query: 11  STTSVKFTSPHPHRS*PP--EVAERSQTTRKKHIGSSPNQIYATSKRLNHQRQHDEKRGQ 184
           ST S   +SP    S     E A  +    K    S+P QIY   KR++  +      G+
Sbjct: 160 STASQNLSSPASSTSSTSSTEKAGTNNNNSKSGQSSNPPQIYPWMKRVHLGQSTVNANGE 219

Query: 185 R*RQ 196
             RQ
Sbjct: 220 TKRQ 223


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 21.8 bits (44), Expect = 1.9
 Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
 Frame = +2

Query: 11  STTSVKFTSPHPHRS*PP--EVAERSQTTRKKHIGSSPNQIYATSKRLNHQRQHDEKRGQ 184
           ST S   +SP    S     E A  +    K    S+P QIY   KR++  +      G+
Sbjct: 116 STASQNLSSPASSTSSTSSTEKAGTNNNNSKSGQSSNPPQIYPWMKRVHLGQSTVNANGE 175

Query: 185 R*RQ 196
             RQ
Sbjct: 176 TKRQ 179



 Score = 19.8 bits (39), Expect = 7.8
 Identities = 6/25 (24%), Positives = 11/25 (44%)
 Frame = +3

Query: 63  LKWRNAHKQQGRSTSDRHRTKFMQP 137
           +KW+  HK    +    H + +  P
Sbjct: 229 MKWKKEHKMASMNIVPYHMSPYGHP 253


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 1.9
 Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
 Frame = +2

Query: 11  STTSVKFTSPHPHRS*PP--EVAERSQTTRKKHIGSSPNQIYATSKRLNHQRQHDEKRGQ 184
           ST S   +SP    S     E A  +    K    S+P QIY   KR++  +      G+
Sbjct: 160 STASQNLSSPASSTSSTSSTEKAGTNNNNSKSGQSSNPPQIYPWMKRVHLGQSTVNANGE 219

Query: 185 R*RQ 196
             RQ
Sbjct: 220 TKRQ 223



 Score = 19.8 bits (39), Expect = 7.8
 Identities = 6/25 (24%), Positives = 11/25 (44%)
 Frame = +3

Query: 63  LKWRNAHKQQGRSTSDRHRTKFMQP 137
           +KW+  HK    +    H + +  P
Sbjct: 273 MKWKKEHKMASMNIVPYHMSPYGHP 297


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 1.9
 Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
 Frame = +2

Query: 11  STTSVKFTSPHPHRS*PP--EVAERSQTTRKKHIGSSPNQIYATSKRLNHQRQHDEKRGQ 184
           ST S   +SP    S     E A  +    K    S+P QIY   KR++  +      G+
Sbjct: 160 STASQNLSSPASSTSSTSSTEKAGTNNNNSKSGQSSNPPQIYPWMKRVHLGQSTVNANGE 219

Query: 185 R*RQ 196
             RQ
Sbjct: 220 TKRQ 223



 Score = 19.8 bits (39), Expect = 7.8
 Identities = 6/25 (24%), Positives = 11/25 (44%)
 Frame = +3

Query: 63  LKWRNAHKQQGRSTSDRHRTKFMQP 137
           +KW+  HK    +    H + +  P
Sbjct: 273 MKWKKEHKMASMNIVPYHMSPYGHP 297


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = +2

Query: 80  SQTTRKKHIGSSPNQIYATSKRLNHQRQHDEKRGQR*RQGVQNH 211
           +Q+    H+G    + +    + +HQ+QH    GQ   QG   H
Sbjct: 159 TQSMNNHHMGHHMQEQHPQHHQPHHQQQHMMYGGQ---QGANMH 199


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = +2

Query: 80  SQTTRKKHIGSSPNQIYATSKRLNHQRQHDEKRGQR*RQGVQNH 211
           +Q+    H+G    + +    + +HQ+QH    GQ   QG   H
Sbjct: 161 TQSMNNHHMGHHMQEQHPQHHQPHHQQQHMMYGGQ---QGANMH 201


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 20.6 bits (41), Expect = 4.5
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +2

Query: 29  FTSPHPHR 52
           F SPHPH+
Sbjct: 347 FCSPHPHK 354


>AF264695-1|AAG13009.1|  100|Tribolium castaneum cephalothorax
           protein.
          Length = 100

 Score = 19.8 bits (39), Expect = 7.8
 Identities = 6/25 (24%), Positives = 11/25 (44%)
 Frame = +3

Query: 63  LKWRNAHKQQGRSTSDRHRTKFMQP 137
           +KW+  HK    +    H + +  P
Sbjct: 61  MKWKKEHKMASMNIVPYHMSPYGHP 85


>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 19.8 bits (39), Expect = 7.8
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -2

Query: 176 SFRHAASDDLIVLRLHKFGSVT 111
           S+ H A+     +R+H  GS+T
Sbjct: 135 SYFHIATTSNEFIRVHHSGSIT 156


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,076
Number of Sequences: 336
Number of extensions: 1213
Number of successful extensions: 24
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 122,585
effective HSP length: 49
effective length of database: 106,121
effective search space used:  6473381
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)