Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30241
         (333 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    26   1.3  
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy...    25   2.3  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    25   2.3  
SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p...    25   4.0  
SPCC1322.08 |srk1|mkp1|MAPK-activated protein kinase Srk1|Schizo...    24   5.3  
SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces pom...    24   7.0  
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc...    23   9.2  
SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo...    23   9.2  
SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|c...    23   9.2  
SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9 |Schiz...    23   9.2  

>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 26.2 bits (55), Expect = 1.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 131  HKFGSVTIRCASSLLFVSVPP 69
            H  GS+ +R   S+LF  VPP
Sbjct: 2172 HASGSIALRITGSVLFALVPP 2192


>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 786

 Score = 25.4 bits (53), Expect = 2.3
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = +2

Query: 68  VAERSQTTRKKHIGSSPNQIYATS---KRLNHQRQH 166
           V   ++TT      SS N ++ TS   +RLNHQ +H
Sbjct: 255 VDHNTRTTTWTRPASSTNPVHNTSSDSQRLNHQNRH 290


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.4 bits (53), Expect = 2.3
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +3

Query: 3   LQHRLLVLSSPHLTRTVHSHLKWRNAH 83
           L+H LL   S  L + + S LKWRN H
Sbjct: 369 LRHELL---SAGLQKAIDSLLKWRNRH 392


>SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 202

 Score = 24.6 bits (51), Expect = 4.0
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +2

Query: 65  EVAERSQTTRKKHIGSSPNQIYATSKRLNHQRQHDEKRGQR*R 193
           E ++R ++ +KK      +++   SKRL     H +KR ++ R
Sbjct: 137 ESSKREKSKKKKEKKEKKDKLKKKSKRLKLDDSHTQKRKRKVR 179


>SPCC1322.08 |srk1|mkp1|MAPK-activated protein kinase
           Srk1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 580

 Score = 24.2 bits (50), Expect = 5.3
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
 Frame = +2

Query: 59  PPEVAERSQTTRKKHIGSSPNQIYATSKRLNHQRQHD-EKRGQR*RQGVQN 208
           P +VA      R   + S   +++  S   +   Q    KRGQR  QG+ N
Sbjct: 451 PEDVAAAGSAARTPGVNSL-REVFNISYAAHRMEQEKIRKRGQRGNQGIMN 500


>SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 419

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 251 EGCAGF*REKLRSYG 207
           +GC+ F +EK R YG
Sbjct: 46  QGCSSFIKEKFRPYG 60


>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 354

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 11/50 (22%), Positives = 20/50 (40%)
 Frame = +2

Query: 2   FTASTTSVKFTSPHPHRS*PPEVAERSQTTRKKHIGSSPNQIYATSKRLN 151
           F     S     P+P    PP   E +       + SS N++++  + L+
Sbjct: 119 FNIPMPSASMFGPNPENPVPPSTEELANMLSNPMVQSSINEMFSNPQMLD 168


>SPBC32C12.02 |ste11|aff1, stex|transcription factor
           Ste11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 468

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +2

Query: 71  AERSQTTRKKHIGSSPNQIYATSKRLNHQRQH 166
           ++ S   R+KH+  +P   Y   KR   +R+H
Sbjct: 62  SDLSALERQKHMLENPEYKYTPKKRSTVRRRH 93


>SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 812

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -2

Query: 215 SYGFALPAVIFAPSFRHAAS 156
           SYG  +PA IF PS    AS
Sbjct: 482 SYGAKVPAGIFVPSMAVGAS 501


>SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 702

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +1

Query: 214 LRSFSRQKPAQPSFN 258
           L++ S+QKPA P+FN
Sbjct: 115 LQNGSKQKPALPNFN 129


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,135,630
Number of Sequences: 5004
Number of extensions: 18955
Number of successful extensions: 55
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)