Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30241
         (333 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0167 - 26415319-26415494,26415591-26415840,26415909-264159...    29   1.2  
10_08_0765 - 20421813-20423174,20423591-20423771,20423862-204241...    27   2.8  
07_03_1071 + 23753883-23754752                                         27   2.8  
12_02_0372 + 18212948-18213821,18213887-18214030,18214128-182142...    27   4.9  
06_03_1067 - 27326167-27326295,27326572-27326656,27326993-273270...    26   8.5  
05_01_0404 - 3185603-3185920,3186877-3186993,3187087-3187107           26   8.5  
01_05_0451 - 22361617-22361811,22362728-22362842,22363443-223635...    26   8.5  

>02_05_0167 -
           26415319-26415494,26415591-26415840,26415909-26415974,
           26416457-26416600,26416813-26416868,26416966-26417101,
           26417190-26417277,26417379-26417482,26418515-26419180,
           26419337-26419432,26419974-26420242,26420334-26420489,
           26421153-26421192
          Length = 748

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +2

Query: 107 GSSPNQIYATSKRLNHQRQHDEKRG--QR*RQGVQNHSYVASRVRSPRSL 250
           G+ P      SK +  Q Q +E+ G  Q  +Q VQ H  +A ++  P+SL
Sbjct: 14  GTLPQNSSDVSKSIVGQVQAEEQEGNGQANQQAVQQHMILAGQLSQPKSL 63


>10_08_0765 - 20421813-20423174,20423591-20423771,20423862-20424117,
            20424768-20425095,20425218-20426156,20427015-20427761,
            20428517-20428789
          Length = 1361

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 16/53 (30%), Positives = 23/53 (43%)
 Frame = +2

Query: 140  KRLNHQRQHDEKRGQR*RQGVQNHSYVASRVRSPRSLHSIARLNNNRARTYDH 298
            K L     H  K G++  Q  Q  ++ A+R  S  S H I    N+R   + H
Sbjct: 887  KNLAEIIMHATKEGEQRNQREQRSAHNANRWSSGSSRHDIIAAGNSRPMRWSH 939


>07_03_1071 + 23753883-23754752
          Length = 289

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -2

Query: 149 LIVLRLHKFGSVTIRCASSLLFVSVPPLQVAMNGAG 42
           L++  L  FG V   C +S+ +  VP L  + NGAG
Sbjct: 194 LLLASLVVFGKVFAICCTSVWWYLVPILTASSNGAG 229


>12_02_0372 +
           18212948-18213821,18213887-18214030,18214128-18214273,
           18214854-18214862
          Length = 390

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
 Frame = +2

Query: 32  TSPHPHRS*PPEVAERSQTTRKKHIGSSPNQIYATSKRLNHQRQHDEKRGQR*RQGVQNH 211
           T P P  S  P+  +R Q+  KKHI S+  Q+ +  ++     +     G++  QG+   
Sbjct: 93  TKPPPSSSTQPQ--QRHQSQVKKHISSAGLQVESVLQQKAENLKDRYNLGRKLGQGLFGT 150

Query: 212 SY--VASRVRSPRSLHSIAR 265
           +Y  V    R   +  SIA+
Sbjct: 151 TYLCVDKATRKEYACKSIAK 170


>06_03_1067 -
           27326167-27326295,27326572-27326656,27326993-27327033,
           27327274-27327333,27327843-27327962,27328842-27329114,
           27329186-27329257,27329798-27329860,27329957-27330139,
           27330544-27330660,27330734-27332683,27332770-27332907,
           27333003-27333284,27334650-27335522
          Length = 1461

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 5   TASTTSVKFTSPHPHRS*PPEVAERSQTTRKKHI 106
           T   TS ++ S  PH    PE+ +R  TT + H+
Sbjct: 636 TLGGTSYEWPSVAPHHFVSPEMQQRPATTDRLHL 669


>05_01_0404 - 3185603-3185920,3186877-3186993,3187087-3187107
          Length = 151

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 22/83 (26%), Positives = 37/83 (44%)
 Frame = +2

Query: 8   ASTTSVKFTSPHPHRS*PPEVAERSQTTRKKHIGSSPNQIYATSKRLNHQRQHDEKRGQR 187
           A+TT +    P   RS       R +  R++ +G    Q        +HQ+Q  + + Q+
Sbjct: 32  ATTTPMWRGGPTGPRSLCNACGIRYRKKRRQELGLDKKQQQEHHPH-HHQQQQQQYQRQQ 90

Query: 188 *RQGVQNHSYVASRVRSPRSLHS 256
            +Q  ++HS  AS V+   S  S
Sbjct: 91  QQQQQEDHSDAASSVKDSSSSSS 113


>01_05_0451 -
           22361617-22361811,22362728-22362842,22363443-22363513,
           22363600-22363754,22363843-22363933,22364049-22364104,
           22364910-22365027,22365087-22365200,22365289-22365504
          Length = 376

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 10/38 (26%), Positives = 15/38 (39%)
 Frame = +3

Query: 54  HSHLKWRNAHKQQGRSTSDRHRTKFMQPQND*IIRGSM 167
           H  L WR  HK +    S  H    + P    +  G++
Sbjct: 167 HQELHWRAKHKNECHQISGSHNASAIMPDAGKVFAGNI 204


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,995,677
Number of Sequences: 37544
Number of extensions: 145558
Number of successful extensions: 466
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 466
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 459426840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)