Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30241
(333 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_53582| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.033
SB_1597| Best HMM Match : PHD (HMM E-Value=1.4e-05) 31 0.18
SB_32414| Best HMM Match : Osteopontin (HMM E-Value=2.4) 31 0.23
SB_26867| Best HMM Match : Acyltransferase (HMM E-Value=4.4) 28 1.6
SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18) 28 2.2
SB_31789| Best HMM Match : Ion_trans (HMM E-Value=6.3e-37) 27 2.9
SB_327| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.9
SB_31002| Best HMM Match : RhoGAP (HMM E-Value=0) 27 3.8
SB_46686| Best HMM Match : RVT_1 (HMM E-Value=0.00018) 27 5.0
SB_43963| Best HMM Match : Ammonium_transp (HMM E-Value=0) 27 5.0
SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.0
SB_621| Best HMM Match : SNF2_N (HMM E-Value=0) 27 5.0
SB_17567| Best HMM Match : DnaJ (HMM E-Value=0.0007) 26 6.6
SB_50147| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.6
SB_49010| Best HMM Match : G-patch (HMM E-Value=5.5e-19) 26 6.6
SB_44957| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.6
SB_59467| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.8
SB_9624| Best HMM Match : PAPA-1 (HMM E-Value=1.2) 26 8.8
>SB_53582| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 393
Score = 33.9 bits (74), Expect = 0.033
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Frame = +2
Query: 77 RSQTTRKKHIGSSPNQIYATSKRLNHQ-RQHDEKRGQR*RQGVQNHSYVASRVRSPRSLH 253
R++ TR + +IY T ++ H R + G+R + ++ A +R R LH
Sbjct: 288 RAKATRPERRQQDQGEIYTTRAKVMHMCRAKATRPGRRLYDQGEGYTTRAKTLRPGRRLH 347
Query: 254 SIARLNNNRARTYDHG 301
N RAR +D G
Sbjct: 348 DQGEGNTTRARLHDQG 363
>SB_1597| Best HMM Match : PHD (HMM E-Value=1.4e-05)
Length = 763
Score = 31.5 bits (68), Expect = 0.18
Identities = 19/65 (29%), Positives = 27/65 (41%)
Frame = +2
Query: 59 PPEVAERSQTTRKKHIGSSPNQIYATSKRLNHQRQHDEKRGQR*RQGVQNHSYVASRVRS 238
PPE + + + S IY +KRLN+ Q K + R G A R +S
Sbjct: 330 PPEDEISPPSIKPTDVKSLTEAIYCLTKRLNNDVQPSMKANEGKRSGDSRSVIPAKRAKS 389
Query: 239 PRSLH 253
+ LH
Sbjct: 390 GKKLH 394
>SB_32414| Best HMM Match : Osteopontin (HMM E-Value=2.4)
Length = 777
Score = 31.1 bits (67), Expect = 0.23
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +2
Query: 29 FTSPHPHRS*PPEVAERSQTTRKKHIGSSPNQIYATSKR 145
+T P P PP V RSQ R K + S+ N+ A ++
Sbjct: 408 YTKPEPKGRRPPRVGRRSQRHRSKSLNSTDNENEADEEK 446
>SB_26867| Best HMM Match : Acyltransferase (HMM E-Value=4.4)
Length = 655
Score = 28.3 bits (60), Expect = 1.6
Identities = 22/70 (31%), Positives = 31/70 (44%)
Frame = +2
Query: 5 TASTTSVKFTSPHPHRS*PPEVAERSQTTRKKHIGSSPNQIYATSKRLNHQRQHDEKRGQ 184
T S ++ F+ PHPH RS +TR HI P+QI+ + R H EK
Sbjct: 237 TYSHSTETFSDPHPHVLTLNRNLLRSTSTR-THIEQEPSQIHIHTS--TSTRTHIEKEPS 293
Query: 185 R*RQGVQNHS 214
+ +HS
Sbjct: 294 QIHIHTYSHS 303
Score = 28.3 bits (60), Expect = 1.6
Identities = 17/42 (40%), Positives = 23/42 (54%)
Frame = +2
Query: 5 TASTTSVKFTSPHPHRS*PPEVAERSQTTRKKHIGSSPNQIY 130
T S ++ F+ PHPH S RS +TR HI P+QI+
Sbjct: 457 TYSHSTETFSDPHPHVSPLNRNLLRSISTR-THIQQEPSQIH 497
Score = 26.2 bits (55), Expect = 6.6
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +2
Query: 29 FTSPHPHRS*PPEVAERSQTTRKKHIGSSPNQIY 130
F+SPHPH RS +TR HI P+QI+
Sbjct: 531 FSSPHPHVLAFNRNLLRSTSTR-THIEKEPSQIH 563
>SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18)
Length = 765
Score = 27.9 bits (59), Expect = 2.2
Identities = 22/97 (22%), Positives = 36/97 (37%), Gaps = 2/97 (2%)
Frame = +2
Query: 35 SPHPHRS*PPEVAERSQTTRKKHIGSSP--NQIYATSKRLNHQRQHDEKRGQR*RQGVQN 208
S P +S + Q +R SP ++ Y +S+ R H R R ++
Sbjct: 236 SRSPKKSRSARRSRSPQKSRSPQRSRSPRSSKRYRSSRSHRKHRSHSRSRSPRSKRSRSP 295
Query: 209 HSYVASRVRSPRSLHSIARLNNNRARTYDHGTITRAR 319
S+ RSPR + R+R+ +R R
Sbjct: 296 RKRRRSKSRSPRRYRDSSSCRRRRSRSRSRSPKSRLR 332
>SB_31789| Best HMM Match : Ion_trans (HMM E-Value=6.3e-37)
Length = 583
Score = 27.5 bits (58), Expect = 2.9
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +2
Query: 71 AERSQTTRKKHIGSSPNQ-IYATSKRLNHQRQHDEKRGQR*RQGVQNHSYVAS 226
A +T RK N +YATSKRL H + R ++ V+ H +S
Sbjct: 413 ANTKRTARKSDAKKHKNHSVYATSKRLTHSIMSINRLKNRLKKRVEVHLSTSS 465
>SB_327| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 140
Score = 27.5 bits (58), Expect = 2.9
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +2
Query: 221 ASRVRSPRSLHSIARLNNNRARTYDHG 301
AS +SP S S+ARLNN HG
Sbjct: 3 ASSHKSPSSTPSLARLNNKHIHMVTHG 29
>SB_31002| Best HMM Match : RhoGAP (HMM E-Value=0)
Length = 1250
Score = 27.1 bits (57), Expect = 3.8
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Frame = +2
Query: 2 FTASTTSVKFTSPHPHRS*PPEVAERSQTTRKKHIGSSPNQIYATSKRLNHQRQH-DEKR 178
FTA + SP P + P E E + K GS+ N + ++ K R H EK+
Sbjct: 1182 FTARKVDIPLDSPEPVPNEPDEATEHLKKPVDKSSGSA-NSLRSSPKPSRSTRPHFPEKK 1240
Query: 179 GQR*RQ 196
+ R+
Sbjct: 1241 SREERE 1246
>SB_46686| Best HMM Match : RVT_1 (HMM E-Value=0.00018)
Length = 491
Score = 26.6 bits (56), Expect = 5.0
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +2
Query: 203 QNHSYVASRVRSPRSLHSIARLNNNRARTYDHGTI 307
+N S +SR SP + + ARL N + ++ GT+
Sbjct: 63 ENESAASSRASSPHNFSARARLGNGLSVSHVSGTV 97
>SB_43963| Best HMM Match : Ammonium_transp (HMM E-Value=0)
Length = 730
Score = 26.6 bits (56), Expect = 5.0
Identities = 16/59 (27%), Positives = 26/59 (44%)
Frame = +2
Query: 5 TASTTSVKFTSPHPHRS*PPEVAERSQTTRKKHIGSSPNQIYATSKRLNHQRQHDEKRG 181
T TS K S H H P E+ + ++ H S I + R H+R++ ++G
Sbjct: 557 TIIVTSSKPLSHHHHHHHPHELPQPLSSSPSSHYHSHNQHIRRSPGRRGHRRENVVEQG 615
>SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 828
Score = 26.6 bits (56), Expect = 5.0
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = +2
Query: 2 FTASTTSVKFTSPHPHRS*PPEVAERSQ 85
F +TT V ++PHP+ PP + ++ +
Sbjct: 11 FANNTTEVSHSAPHPYAPYPPALTQQPE 38
>SB_621| Best HMM Match : SNF2_N (HMM E-Value=0)
Length = 1432
Score = 26.6 bits (56), Expect = 5.0
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +2
Query: 20 SVKFTSPHPHRS*PPEVAERSQTTRKKHIGSSPNQIYATSKRLNHQRQH--DEKR 178
S +++S H H P R+ + +H G SP+ + + + R+H DEKR
Sbjct: 1377 SREYSSDHRH----PSFKHRTSSESSRHSGQSPDVLSSPVRTSYEARKHYSDEKR 1427
>SB_17567| Best HMM Match : DnaJ (HMM E-Value=0.0007)
Length = 831
Score = 26.2 bits (55), Expect = 6.6
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +2
Query: 2 FTASTTSVKFTSPHPHRS*PPEVAERS--QTTRKKHIGSSPNQIYATSKRLNHQRQHDEK 175
FT S +S + SP P R R+ T+++KH +S ++ TSK L+ + +K
Sbjct: 563 FTNSPSSSE-GSPSPVRQEEASQGARNGKDTSKQKHDSASDKRLPHTSKNLSWAERQKKK 621
Query: 176 RGQR 187
+ R
Sbjct: 622 KSAR 625
>SB_50147| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 739
Score = 26.2 bits (55), Expect = 6.6
Identities = 16/58 (27%), Positives = 30/58 (51%)
Frame = +2
Query: 5 TASTTSVKFTSPHPHRS*PPEVAERSQTTRKKHIGSSPNQIYATSKRLNHQRQHDEKR 178
TAS ++ K T+P R+ P A++ + + KKH G N + +H + D+++
Sbjct: 360 TASPSTTK-TTPTTPRTTPSASADKKKESGKKHGGIDWNPFHFFRNIWHHLKGDDKEK 416
>SB_49010| Best HMM Match : G-patch (HMM E-Value=5.5e-19)
Length = 263
Score = 26.2 bits (55), Expect = 6.6
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +1
Query: 88 NKEEAHRIVTEPNLCNLKTIKSSEAA*RKEG 180
NK+E H+++ E N +K IK E R++G
Sbjct: 38 NKDERHKVLNEKN--KIKPIKEREKEQREQG 66
>SB_44957| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1336
Score = 26.2 bits (55), Expect = 6.6
Identities = 8/31 (25%), Positives = 15/31 (48%)
Frame = +3
Query: 54 HSHLKWRNAHKQQGRSTSDRHRTKFMQPQND 146
H H W+ K+ + T+D+ R + + D
Sbjct: 323 HKHRGWKEEQKELAKKTTDKWRANILMMKKD 353
>SB_59467| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 864
Score = 25.8 bits (54), Expect = 8.8
Identities = 13/52 (25%), Positives = 25/52 (48%)
Frame = +2
Query: 146 LNHQRQHDEKRGQR*RQGVQNHSYVASRVRSPRSLHSIARLNNNRARTYDHG 301
L QR D+ ++ +Q +Q+H + + S + +S+ N N + HG
Sbjct: 432 LRQQRIRDDMILRQQQQNLQHHRVLPRNIPSQKDAYSVTSENLNHSPGRHHG 483
>SB_9624| Best HMM Match : PAPA-1 (HMM E-Value=1.2)
Length = 278
Score = 25.8 bits (54), Expect = 8.8
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = +2
Query: 71 AERSQTTRKKHIGSSPNQIYATSKRLNHQRQHDEKRGQR*RQGVQNHSYVAS--RVRSPR 244
A Q R++ + +++ S L +R +EK+G GV +YVA+ R R+P
Sbjct: 109 AREMQMIRERDAEINSLRLHIRSLELEVKRITEEKQGLVRAIGVLQENYVAADIRERNPH 168
Query: 245 SLHSIARLN 271
+ AR N
Sbjct: 169 AKPESARQN 177
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,114,525
Number of Sequences: 59808
Number of extensions: 163831
Number of successful extensions: 475
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 475
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 475580678
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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