Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30241
(333 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF125459-6|AAN60503.1| 219|Caenorhabditis elegans Hypothetical ... 38 0.002
AF125459-5|AAD12844.1| 345|Caenorhabditis elegans Hypothetical ... 38 0.002
U23448-1|AAM81126.1| 1129|Caenorhabditis elegans Egg laying defe... 30 0.35
AF096618-1|AAD27790.1| 1129|Caenorhabditis elegans EGL-27 protein. 30 0.35
U23448-3|AAO26017.1| 612|Caenorhabditis elegans Egg laying defe... 30 0.46
U23448-2|AAM81127.1| 1124|Caenorhabditis elegans Egg laying defe... 30 0.46
AF003145-3|AAB57717.1| 751|Caenorhabditis elegans Cpeb polya bi... 29 0.61
Z82078-6|CAB04946.1| 257|Caenorhabditis elegans Hypothetical pr... 27 2.5
AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily a... 27 3.3
AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily a... 27 3.3
AF098501-1|AAC67404.2| 548|Caenorhabditis elegans Hypothetical ... 27 4.3
U29244-15|AAC71096.2| 471|Caenorhabditis elegans Hypothetical p... 26 5.7
Z73898-7|CAA98070.1| 577|Caenorhabditis elegans Hypothetical pr... 26 7.5
>AF125459-6|AAN60503.1| 219|Caenorhabditis elegans Hypothetical
protein Y25C1A.8b protein.
Length = 219
Score = 37.5 bits (83), Expect = 0.002
Identities = 28/89 (31%), Positives = 34/89 (38%)
Frame = +2
Query: 59 PPEVAERSQTTRKKHIGSSPNQIYATSKRLNHQRQHDEKRGQR*RQGVQNHSYVASRVRS 238
P E+ + RK H S + KR N R D KRG+R R + SY R
Sbjct: 117 PESEDEKEKDRRKMHKTSRERDRESHRKRSNSPRDRDRKRGKRSRSRSRERSYRDDRRDR 176
Query: 239 PRSLHSIARLNNNRARTYDHGTITRARRE 325
RS R + R T D RRE
Sbjct: 177 KRSRSRERRRSPPRGTTSDRRRDDERRRE 205
>AF125459-5|AAD12844.1| 345|Caenorhabditis elegans Hypothetical
protein Y25C1A.8a protein.
Length = 345
Score = 37.5 bits (83), Expect = 0.002
Identities = 28/89 (31%), Positives = 34/89 (38%)
Frame = +2
Query: 59 PPEVAERSQTTRKKHIGSSPNQIYATSKRLNHQRQHDEKRGQR*RQGVQNHSYVASRVRS 238
P E+ + RK H S + KR N R D KRG+R R + SY R
Sbjct: 243 PESEDEKEKDRRKMHKTSRERDRESHRKRSNSPRDRDRKRGKRSRSRSRERSYRDDRRDR 302
Query: 239 PRSLHSIARLNNNRARTYDHGTITRARRE 325
RS R + R T D RRE
Sbjct: 303 KRSRSRERRRSPPRGTTSDRRRDDERRRE 331
>U23448-1|AAM81126.1| 1129|Caenorhabditis elegans Egg laying defective
protein 27,isoform a protein.
Length = 1129
Score = 30.3 bits (65), Expect = 0.35
Identities = 20/91 (21%), Positives = 36/91 (39%)
Frame = +2
Query: 23 VKFTSPHPHRS*PPEVAERSQTTRKKHIGSSPNQIYATSKRLNHQRQHDEKRGQR*RQGV 202
V+F H+ +AE+ Q R + + +RQH ++ Q Q
Sbjct: 885 VQFQLMMAHQHQQKMIAEQQQQQRHAAAQQLREREQREQRERERERQHQQQAQQALHQQQ 944
Query: 203 QNHSYVASRVRSPRSLHSIARLNNNRARTYD 295
Q H+ A+ +P + +A + N+ A D
Sbjct: 945 QQHAAAAANQLNPAMMQMMALMANSAASQQD 975
>AF096618-1|AAD27790.1| 1129|Caenorhabditis elegans EGL-27 protein.
Length = 1129
Score = 30.3 bits (65), Expect = 0.35
Identities = 20/91 (21%), Positives = 36/91 (39%)
Frame = +2
Query: 23 VKFTSPHPHRS*PPEVAERSQTTRKKHIGSSPNQIYATSKRLNHQRQHDEKRGQR*RQGV 202
V+F H+ +AE+ Q R + + +RQH ++ Q Q
Sbjct: 885 VQFQLMMAHQHQQKMIAEQQQQQRHAAAQQLREREQREQRERERERQHQQQAQQALHQQQ 944
Query: 203 QNHSYVASRVRSPRSLHSIARLNNNRARTYD 295
Q H+ A+ +P + +A + N+ A D
Sbjct: 945 QQHAAAAANQLNPAMMQMMALMANSAASQQD 975
>U23448-3|AAO26017.1| 612|Caenorhabditis elegans Egg laying
defective protein 27,isoform c protein.
Length = 612
Score = 29.9 bits (64), Expect = 0.46
Identities = 20/91 (21%), Positives = 36/91 (39%)
Frame = +2
Query: 23 VKFTSPHPHRS*PPEVAERSQTTRKKHIGSSPNQIYATSKRLNHQRQHDEKRGQR*RQGV 202
V+ H H+ +AE+ Q R + + +RQH ++ Q Q
Sbjct: 370 VQLMMAHQHQQ--KMIAEQQQQQRHAAAQQLREREQREQRERERERQHQQQAQQALHQQQ 427
Query: 203 QNHSYVASRVRSPRSLHSIARLNNNRARTYD 295
Q H+ A+ +P + +A + N+ A D
Sbjct: 428 QQHAAAAANQLNPAMMQMMALMANSAASQQD 458
>U23448-2|AAM81127.1| 1124|Caenorhabditis elegans Egg laying defective
protein 27,isoform b protein.
Length = 1124
Score = 29.9 bits (64), Expect = 0.46
Identities = 20/91 (21%), Positives = 36/91 (39%)
Frame = +2
Query: 23 VKFTSPHPHRS*PPEVAERSQTTRKKHIGSSPNQIYATSKRLNHQRQHDEKRGQR*RQGV 202
V+ H H+ +AE+ Q R + + +RQH ++ Q Q
Sbjct: 882 VQLMMAHQHQQ--KMIAEQQQQQRHAAAQQLREREQREQRERERERQHQQQAQQALHQQQ 939
Query: 203 QNHSYVASRVRSPRSLHSIARLNNNRARTYD 295
Q H+ A+ +P + +A + N+ A D
Sbjct: 940 QQHAAAAANQLNPAMMQMMALMANSAASQQD 970
>AF003145-3|AAB57717.1| 751|Caenorhabditis elegans Cpeb polya
binding family protein 3 protein.
Length = 751
Score = 29.5 bits (63), Expect = 0.61
Identities = 19/72 (26%), Positives = 35/72 (48%)
Frame = +2
Query: 20 SVKFTSPHPHRS*PPEVAERSQTTRKKHIGSSPNQIYATSKRLNHQRQHDEKRGQR*RQG 199
S + ++ HP+ S + S+TT+K +Q +++RLN +R ++K+
Sbjct: 120 SRRTSTEHPNSSNRMHIFGSSRTTKKSIDSERNSQRKKSARRLNFERDAEQKKDS---TK 176
Query: 200 VQNHSYVASRVR 235
N S+VA R
Sbjct: 177 TNNSSFVAEMTR 188
>Z82078-6|CAB04946.1| 257|Caenorhabditis elegans Hypothetical
protein W09D6.5 protein.
Length = 257
Score = 27.5 bits (58), Expect = 2.5
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +2
Query: 104 IGSSPNQIYATSKRLNHQRQHDEKRGQR*RQG-VQNHSYVASRVRSPRSLHSIARLNNNR 280
I + P+ + S + N Q + ++K R+ V SY SPR LH ++ ++R
Sbjct: 65 ISAPPSSLKEKSPQSNRQTKSNKKSSPPPRKSPVMTSSYQVQYPNSPRDLHLVSSTPSSR 124
Query: 281 A 283
+
Sbjct: 125 S 125
>AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform b protein.
Length = 774
Score = 27.1 bits (57), Expect = 3.3
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +2
Query: 11 STTSVKFTSPHPHRS*PPEVAERSQTTRKKHIGSSPNQIYATSKRL 148
+T +K T+ HPHR PP+ + ++ + SS + T R+
Sbjct: 688 NTRHLKRTTEHPHRKQPPQKRDNTKDQHRGGKKSSHHHSRETKHRI 733
>AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform a protein.
Length = 996
Score = 27.1 bits (57), Expect = 3.3
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +2
Query: 11 STTSVKFTSPHPHRS*PPEVAERSQTTRKKHIGSSPNQIYATSKRL 148
+T +K T+ HPHR PP+ + ++ + SS + T R+
Sbjct: 910 NTRHLKRTTEHPHRKQPPQKRDNTKDQHRGGKKSSHHHSRETKHRI 955
>AF098501-1|AAC67404.2| 548|Caenorhabditis elegans Hypothetical
protein H28G03.2a protein.
Length = 548
Score = 26.6 bits (56), Expect = 4.3
Identities = 11/34 (32%), Positives = 23/34 (67%)
Frame = +2
Query: 77 RSQTTRKKHIGSSPNQIYATSKRLNHQRQHDEKR 178
+S T+R ++ SP + +AT + + +R+HD+K+
Sbjct: 186 QSPTSRHRNSSFSPPRRHATREVHSRKRRHDDKK 219
>U29244-15|AAC71096.2| 471|Caenorhabditis elegans Hypothetical
protein ZK1248.15 protein.
Length = 471
Score = 26.2 bits (55), Expect = 5.7
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +2
Query: 71 AERSQTTRKKHIGSSPNQIYATSKRLNHQRQHDEKRGQR*RQ 196
++R QTTRK+H +S + Y TS + ++R K ++ R+
Sbjct: 328 SDRRQTTRKEHHANSHSNKY-TSNDIKYKRNEAVKSVKKHRE 368
>Z73898-7|CAA98070.1| 577|Caenorhabditis elegans Hypothetical
protein ZK822.5a protein.
Length = 577
Score = 25.8 bits (54), Expect = 7.5
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -2
Query: 188 IFAPSFRHAASDDLIVLRLHKFGSVTIRCASSLLFV 81
+F P F S L +H++ S+ IR SLLF+
Sbjct: 105 VFLPVFHKMKSTCLHEYFIHRYNSILIRRLFSLLFL 140
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,499,467
Number of Sequences: 27780
Number of extensions: 115734
Number of successful extensions: 323
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 323
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 408121444
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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