Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30241
         (333 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    22   1.7  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   5.2  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    20   6.8  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    20   6.8  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    20   6.8  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    20   6.8  
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    20   9.1  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 22.2 bits (45), Expect = 1.7
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 7/45 (15%)
 Frame = +2

Query: 173 KRGQR*RQGVQNHSYV------ASRVRSPRSLH-SIARLNNNRAR 286
           K+G + +QG+Q H Y+       +R+ SP   + S+ +  N RAR
Sbjct: 352 KKGFKLKQGIQFHLYINTAPCGDARIFSPHEENESVDKHPNRRAR 396


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 20.6 bits (41), Expect = 5.2
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +1

Query: 37  TSPAPFIAT*SGGTLTNNKEEAHRIVTEPNLCNLK 141
           T P P  AT  G T+T+ ++  H      N  ++K
Sbjct: 296 TQPTPPSATLVGTTITHLRDPDHHSTDIQNCDSVK 330


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 20.2 bits (40), Expect = 6.8
 Identities = 14/58 (24%), Positives = 24/58 (41%)
 Frame = +2

Query: 98  KHIGSSPNQIYATSKRLNHQRQHDEKRGQR*RQGVQNHSYVASRVRSPRSLHSIARLN 271
           K  G+  N       + N  RQ+D KR    +   QN+       R+   +H  ++L+
Sbjct: 489 KQNGNRQNGNKQNDNKQNGNRQNDNKRNGNRQNDNQNNQ--NDNNRNDNQVHHSSKLH 544


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 20.2 bits (40), Expect = 6.8
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -2

Query: 176 SFRHAASDDLIVLRLHKFGSVT 111
           S+ H A+     +R+H  GS+T
Sbjct: 106 SYFHIATTSNEFIRIHHSGSIT 127


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 20.2 bits (40), Expect = 6.8
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -2

Query: 176 SFRHAASDDLIVLRLHKFGSVT 111
           S+ H A+     +R+H  GS+T
Sbjct: 106 SYFHIATTSNEFIRIHHSGSIT 127


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 20.2 bits (40), Expect = 6.8
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -2

Query: 176 SFRHAASDDLIVLRLHKFGSVT 111
           S+ H A+     +R+H  GS+T
Sbjct: 45  SYFHIATTSNEFIRIHHSGSIT 66


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 19.8 bits (39), Expect = 9.1
 Identities = 6/25 (24%), Positives = 11/25 (44%)
 Frame = +3

Query: 63  LKWRNAHKQQGRSTSDRHRTKFMQP 137
           +KW+  HK    +    H + +  P
Sbjct: 61  MKWKKEHKMASMNIVPYHMSPYGHP 85


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,079
Number of Sequences: 438
Number of extensions: 1353
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7466580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)