Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30241
         (333 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g19990.1 68414.m02504 expressed protein ; expression supporte...    33   0.048
At5g41310.1 68418.m05020 kinesin motor protein-related                 29   0.77 
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar...    29   0.77 
At4g11720.1 68417.m01870 hypothetical protein                          28   1.4  
At3g51070.1 68416.m05592 dehydration-responsive protein-related ...    28   1.4  
At3g07050.1 68416.m00837 GTP-binding family protein contains Pfa...    26   7.2  
At1g02040.1 68414.m00124 zinc finger (C2H2 type) family protein ...    26   7.2  
At5g45330.1 68418.m05564 expressed protein ; expression supporte...    25   9.5  
At5g44320.1 68418.m05427 eukaryotic translation initiation facto...    25   9.5  
At5g16820.2 68418.m01971 heat shock factor protein 3 (HSF3) / he...    25   9.5  
At5g16820.1 68418.m01970 heat shock factor protein 3 (HSF3) / he...    25   9.5  
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit...    25   9.5  
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit...    25   9.5  
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit...    25   9.5  
At4g17040.1 68417.m02570 ATP-dependent Clp protease proteolytic ...    25   9.5  

>At1g19990.1 68414.m02504 expressed protein ; expression supported
           by MPSS
          Length = 251

 Score = 33.1 bits (72), Expect = 0.048
 Identities = 18/69 (26%), Positives = 33/69 (47%)
 Frame = +2

Query: 26  KFTSPHPHRS*PPEVAERSQTTRKKHIGSSPNQIYATSKRLNHQRQHDEKRGQR*RQGVQ 205
           K +SP    +  P    +S T +KK +  SP++  +  K+ N  +   +KR +       
Sbjct: 176 KLSSPVKSAASTPRSNSKSVTVKKKEVQKSPSEALSNKKKGNDSKPTTKKRKKNSDDDDS 235

Query: 206 NHSYVASRV 232
           +  ++ASRV
Sbjct: 236 DDDFLASRV 244


>At5g41310.1 68418.m05020 kinesin motor protein-related 
          Length = 961

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
 Frame = +2

Query: 44   PHRS*PPEVAERSQTTRKKHIGSSPNQIYATSKRLNHQRQHDEKRGQR*RQGVQNHSYVA 223
            P  S PPE+ E+S+   K H+G  P      SK L H  + D  +  R      +   + 
Sbjct: 888  PETSNPPEMFEQSEQNDKAHVGVGP------SKPLKHTPKPDISKPSRLSISTTSSKALT 941

Query: 224  SRVRSPRSL-HSIARLNNNR 280
            S  R    +  S+  LN  R
Sbjct: 942  SSKRPVTGISSSVKPLNRKR 961


>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
            RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
            contains Pfam profiles PF00270: DEAD/DEAH box helicase,
            PF00271: Helicase conserved C-terminal domain, PF00397:
            WW domain
          Length = 1088

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 21/72 (29%), Positives = 34/72 (47%)
 Frame = +2

Query: 77   RSQTTRKKHIGSSPNQIYATSKRLNHQRQHDEKRGQR*RQGVQNHSYVASRVRSPRSLHS 256
            R    R +    SP+ +    +  ++ R    + G   R   ++ S+  SR RSPR  HS
Sbjct: 946  RFDNRRGRSRSRSPDLVRPRRRSSSYSRSRS-RSGSYSRSRSRSRSWSRSRSRSPR--HS 1002

Query: 257  IARLNNNRARTY 292
              R  +NR+R+Y
Sbjct: 1003 RDRGGHNRSRSY 1014


>At4g11720.1 68417.m01870 hypothetical protein
          Length = 658

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 19/61 (31%), Positives = 28/61 (45%)
 Frame = +3

Query: 9   HRLLVLSSPHLTRTVHSHLKWRNAHKQQGRSTSDRHRTKFMQPQND*IIRGSMTKRGGKD 188
           HR L+ S   +    H H K R+ H    R T  RH  K    Q+D +++  M +R   D
Sbjct: 557 HRRLLPSRADVVNRHHHHHKHRHHHNHH-RRTHQRH--KHHHGQDDDVLQKMMLERDHSD 613

Query: 189 N 191
           +
Sbjct: 614 S 614


>At3g51070.1 68416.m05592 dehydration-responsive protein-related
           similar to early-responsive to dehydration stress ERD3
           protein [Arabidopsis thaliana] GI:15320410; contains
           Pfam profile PF03141: Putative methyltransferase
          Length = 895

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 16/54 (29%), Positives = 30/54 (55%)
 Frame = +3

Query: 51  VHSHLKWRNAHKQQGRSTSDRHRTKFMQPQND*IIRGSMTKRGGKDNGRECKTI 212
           V S  + R + K++  +TS + +T+  Q  ND      +++   KDNG+E +T+
Sbjct: 99  VKSEDEQRKSAKEKSETTSSKTQTQETQQNND----DKISEEKEKDNGKENQTV 148


>At3g07050.1 68416.m00837 GTP-binding family protein contains Pfam
           domain, PF01926: GTPase of unknown function
          Length = 582

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +2

Query: 65  EVAERSQTTRKKHIGSSPNQIYATSKRLNHQRQHDEKRGQR 187
           E  E  +T  K   G    ++YA    LN ++Q  EK+ ++
Sbjct: 493 EEEEAGKTKEKSETGRQNVKLYAAESMLNTKKQKAEKKKRK 533


>At1g02040.1 68414.m00124 zinc finger (C2H2 type) family protein
           contains Pfam profile: PF00096 zinc finger, C2H2 type
          Length = 324

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 59  PPEVAERSQTTRKKHIGSSPNQ 124
           PP   ERS +T+  H+  SPN+
Sbjct: 86  PPWKRERSMSTQHHHLNLSPNE 107


>At5g45330.1 68418.m05564 expressed protein ; expression supported
           by MPSS
          Length = 571

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 19/53 (35%), Positives = 21/53 (39%), Gaps = 3/53 (5%)
 Frame = +2

Query: 35  SPHPHRS*P---PEVAERSQTTRKKHIGSSPNQIYATSKRLNHQRQHDEKRGQ 184
           S HPHRS P   P VA  S       +  SP   +     L   RQ    RGQ
Sbjct: 331 SNHPHRSIPHELPAVASNSAPVIPGPLSKSPESFFDMDPSL-QSRQQMVYRGQ 382


>At5g44320.1 68418.m05427 eukaryotic translation initiation factor 3
           subunit 7, putative / eIF-3 zeta, putative / eIF3d,
           putative similar to initiation factor 3d [Arabidopsis
           thaliana] GI:12407755, SP|O15371 Eukaryotic translation
           initiation factor 3 subunit 7 (eIF-3 zeta) (eIF3 p66)
           (eIF3d) {Homo sapiens}; contains Pfam profile PF05091:
           Eukaryotic translation initiation factor 3 subunit 7
           (eIF-3)
          Length = 588

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 176 SFRHAASDDLIVLRLHKFGSVTIRCASSLL 87
           SF+   SDDL++ RL K    T+    ++L
Sbjct: 242 SFKVTTSDDLVIRRLAKEDKATVFATDAIL 271


>At5g16820.2 68418.m01971 heat shock factor protein 3 (HSF3) / heat
           shock transcription factor 3 (HSTF3) identical to heat
           shock transcription factor 3 (HSF3) SP:O81821 from
           [Arabidopsis thaliana]
          Length = 481

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 19/70 (27%), Positives = 34/70 (48%)
 Frame = +2

Query: 122 QIYATSKRLNHQRQHDEKRGQR*RQGVQNHSYVASRVRSPRSLHSIARLNNNRARTYDHG 301
           Q  AT  +L +  Q  +   QR +Q +   S++A  V+SP  L+ + + NNN       G
Sbjct: 171 QQQATENQLQNVGQKVQVMEQRQQQMM---SFLAKAVQSPGFLNQLVQQNNNDGNRQIPG 227

Query: 302 TITRARREIN 331
           +  + R  ++
Sbjct: 228 SNKKRRLPVD 237


>At5g16820.1 68418.m01970 heat shock factor protein 3 (HSF3) / heat
           shock transcription factor 3 (HSTF3) identical to heat
           shock transcription factor 3 (HSF3) SP:O81821 from
           [Arabidopsis thaliana]
          Length = 481

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 19/70 (27%), Positives = 34/70 (48%)
 Frame = +2

Query: 122 QIYATSKRLNHQRQHDEKRGQR*RQGVQNHSYVASRVRSPRSLHSIARLNNNRARTYDHG 301
           Q  AT  +L +  Q  +   QR +Q +   S++A  V+SP  L+ + + NNN       G
Sbjct: 171 QQQATENQLQNVGQKVQVMEQRQQQMM---SFLAKAVQSPGFLNQLVQQNNNDGNRQIPG 227

Query: 302 TITRARREIN 331
           +  + R  ++
Sbjct: 228 SNKKRRLPVD 237


>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
           putative similar to U2 snRNP auxiliary factor, large
           subunit [Nicotiana plumbaginifolia] GI:3850823
          Length = 565

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
 Frame = +2

Query: 47  HRS*PPEVAERSQTTRKKHIGSSPNQIYATSKRLNHQRQHDEKRGQR*RQG---VQNHSY 217
           HRS       R +  R++  G   +  Y  S+  +H R+ D++ G+R R+     ++ S 
Sbjct: 98  HRSSRHRDHSRERGERRER-GGRDDDDYRRSRDRDHDRRRDDRGGRRSRRSRSRSKDRSE 156

Query: 218 VASRVRSP 241
             +R RSP
Sbjct: 157 RRTRSRSP 164


>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
           putative similar to U2 snRNP auxiliary factor, large
           subunit [Nicotiana plumbaginifolia] GI:3850823
          Length = 542

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
 Frame = +2

Query: 47  HRS*PPEVAERSQTTRKKHIGSSPNQIYATSKRLNHQRQHDEKRGQR*RQG---VQNHSY 217
           HRS       R +  R++  G   +  Y  S+  +H R+ D++ G+R R+     ++ S 
Sbjct: 98  HRSSRHRDHSRERGERRER-GGRDDDDYRRSRDRDHDRRRDDRGGRRSRRSRSRSKDRSE 156

Query: 218 VASRVRSP 241
             +R RSP
Sbjct: 157 RRTRSRSP 164


>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
           putative similar to U2 snRNP auxiliary factor, large
           subunit [Nicotiana plumbaginifolia] GI:3850823
          Length = 573

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
 Frame = +2

Query: 47  HRS*PPEVAERSQTTRKKHIGSSPNQIYATSKRLNHQRQHDEKRGQR*RQG---VQNHSY 217
           HRS       R +  R++  G   +  Y  S+  +H R+ D++ G+R R+     ++ S 
Sbjct: 98  HRSSRHRDHSRERGERRER-GGRDDDDYRRSRDRDHDRRRDDRGGRRSRRSRSRSKDRSE 156

Query: 218 VASRVRSP 241
             +R RSP
Sbjct: 157 RRTRSRSP 164


>At4g17040.1 68417.m02570 ATP-dependent Clp protease proteolytic
           subunit, putative similar to ATP-dependent Clp protease
           proteolytic subunit GI:7264063 from [Synechococcus
           sp.PCC 7942]
          Length = 305

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = +2

Query: 98  KHIGSSPNQIYATSKR 145
           KHIG SP QI A  KR
Sbjct: 250 KHIGKSPEQIEADMKR 265


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,147,517
Number of Sequences: 28952
Number of extensions: 107441
Number of successful extensions: 317
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 317
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 390583752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)