Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30237
(639 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF225975-2|AAF74116.1| 302|Tribolium castaneum Tc-tailless prot... 24 1.2
AF219117-1|AAF71999.1| 406|Tribolium castaneum tailless ortholo... 24 1.2
EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic acetyl... 23 1.6
EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic acetyl... 23 1.6
EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic acetyl... 23 1.6
AY695256-1|AAW21973.1| 168|Tribolium castaneum ventral nerve co... 22 3.8
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ... 21 6.6
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ... 21 6.6
AJ005083-1|CAB65469.1| 585|Tribolium castaneum signal receptor ... 21 6.6
EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic acetyl... 21 8.7
EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic acetyl... 21 8.7
DQ855501-1|ABH88188.1| 146|Tribolium castaneum chemosensory pro... 21 8.7
AF321227-4|AAK16424.1| 246|Tribolium castaneum Zen protein. 21 8.7
>AF225975-2|AAF74116.1| 302|Tribolium castaneum Tc-tailless
protein.
Length = 302
Score = 23.8 bits (49), Expect = 1.2
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = -3
Query: 490 PSTSSAVRDGVALVCADASRSRHLYVL-CIG 401
PS+SS + D VC D S +H + C G
Sbjct: 27 PSSSSRILDIPCKVCGDFSSGKHYNIFACDG 57
>AF219117-1|AAF71999.1| 406|Tribolium castaneum tailless ortholog
protein.
Length = 406
Score = 23.8 bits (49), Expect = 1.2
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = -3
Query: 490 PSTSSAVRDGVALVCADASRSRHLYVL-CIG 401
PS+SS + D VC D S +H + C G
Sbjct: 27 PSSSSRILDIPCKVCGDFSSGKHYNIFACDG 57
>EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
5 protein.
Length = 311
Score = 23.4 bits (48), Expect = 1.6
Identities = 8/35 (22%), Positives = 18/35 (51%)
Frame = -1
Query: 630 LVLYNGCPTLYTRIYKSRMVVPAGADLHYAPPPVY 526
+++YN + +++ +VV G Y PP ++
Sbjct: 90 VLMYNSADEGFDGTFQTNVVVKHGGSCLYVPPGIF 124
>EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
4 protein.
Length = 311
Score = 23.4 bits (48), Expect = 1.6
Identities = 8/35 (22%), Positives = 18/35 (51%)
Frame = -1
Query: 630 LVLYNGCPTLYTRIYKSRMVVPAGADLHYAPPPVY 526
+++YN + +++ +VV G Y PP ++
Sbjct: 90 VLMYNSADEGFDGTFQTNVVVKHGGSCLYVPPGIF 124
>EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
1 protein.
Length = 311
Score = 23.4 bits (48), Expect = 1.6
Identities = 8/35 (22%), Positives = 18/35 (51%)
Frame = -1
Query: 630 LVLYNGCPTLYTRIYKSRMVVPAGADLHYAPPPVY 526
+++YN + +++ +VV G Y PP ++
Sbjct: 90 VLMYNSADEGFDGTFQTNVVVKHGGSCLYVPPGIF 124
>AY695256-1|AAW21973.1| 168|Tribolium castaneum ventral nerve cord
defective protein protein.
Length = 168
Score = 22.2 bits (45), Expect = 3.8
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = -2
Query: 83 PCCPPGPKHP 54
PC GPKHP
Sbjct: 130 PCLSGGPKHP 139
>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
protein.
Length = 1464
Score = 21.4 bits (43), Expect = 6.6
Identities = 7/32 (21%), Positives = 14/32 (43%)
Frame = +1
Query: 334 ITWTFSSAAKCFYFEGNNSAIIYLYIVRINAL 429
+ W F YFE N +Y+ +++ +
Sbjct: 1252 LDWPFDPKVNFTYFEDKNEIGVYITYLQLEPI 1283
>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
protein.
Length = 1464
Score = 21.4 bits (43), Expect = 6.6
Identities = 7/32 (21%), Positives = 14/32 (43%)
Frame = +1
Query: 334 ITWTFSSAAKCFYFEGNNSAIIYLYIVRINAL 429
+ W F YFE N +Y+ +++ +
Sbjct: 1252 LDWPFDPKVNFTYFEDKNEIGVYITYLQLEPI 1283
>AJ005083-1|CAB65469.1| 585|Tribolium castaneum signal receptor
protein protein.
Length = 585
Score = 21.4 bits (43), Expect = 6.6
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +2
Query: 488 REGAAFSNRSTCIYTGGGA*CKSAP 562
R GA +N TC+ GG CK P
Sbjct: 265 RPGACHNN-GTCLDKVGGFECKCPP 288
>EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
3 protein.
Length = 311
Score = 21.0 bits (42), Expect = 8.7
Identities = 7/35 (20%), Positives = 17/35 (48%)
Frame = -1
Query: 630 LVLYNGCPTLYTRIYKSRMVVPAGADLHYAPPPVY 526
+++YN + +++ +VV Y PP ++
Sbjct: 90 VLMYNSADEGFDGTFQTNVVVKHNGSCLYVPPGIF 124
>EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
2 protein.
Length = 311
Score = 21.0 bits (42), Expect = 8.7
Identities = 7/35 (20%), Positives = 17/35 (48%)
Frame = -1
Query: 630 LVLYNGCPTLYTRIYKSRMVVPAGADLHYAPPPVY 526
+++YN + +++ +VV Y PP ++
Sbjct: 90 VLMYNSADEGFDGTFQTNVVVKHNGSCLYVPPGIF 124
>DQ855501-1|ABH88188.1| 146|Tribolium castaneum chemosensory
protein 15 protein.
Length = 146
Score = 21.0 bits (42), Expect = 8.7
Identities = 8/22 (36%), Positives = 11/22 (50%)
Frame = +3
Query: 174 VNYSHLITSKLEKFERVRLNHI 239
+ HL SK E V+L H+
Sbjct: 109 IKLQHLHQSKFNPHEEVKLQHL 130
>AF321227-4|AAK16424.1| 246|Tribolium castaneum Zen protein.
Length = 246
Score = 21.0 bits (42), Expect = 8.7
Identities = 8/18 (44%), Positives = 8/18 (44%)
Frame = +1
Query: 334 ITWTFSSAAKCFYFEGNN 387
I W CFY EG N
Sbjct: 215 IDWALPKQEDCFYQEGWN 232
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,053
Number of Sequences: 336
Number of extensions: 3334
Number of successful extensions: 15
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16501678
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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