Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30237
         (639 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    34   0.020
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    27   3.0  
SPMIT.03 |||mitochondrial DNA binding endonuclease|Schizosacchar...    26   5.3  
SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|ch...    26   5.3  
SPAC3H1.14 ||SPAC9G1.01|cytoplasmic vesicle protein, Vid24 famil...    25   7.0  
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch...    25   7.0  
SPCC285.09c |cgs2|pde1|cAMP-specific phosphodiesterase Cgs2|Schi...    25   9.2  
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    25   9.2  

>SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 311

 Score = 33.9 bits (74), Expect = 0.020
 Identities = 19/62 (30%), Positives = 31/62 (50%)
 Frame = -2

Query: 470 KRWSGSSLRRRLTIKAFIRTMYRYIIAELFPSK*KHLAALENVQVIFY*NFVTLLFDYVT 291
           K+W+ +S+ RR  +K  I      IIAE FP + +   +L  + V+    F+T    Y+ 
Sbjct: 62  KKWNATSVERRFQLKRVIAVRDSSIIAEEFPQESESATSLNGIDVLKK-LFLTYCIPYLL 120

Query: 290 HK 285
            K
Sbjct: 121 EK 122


>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1616

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
 Frame = -3

Query: 208  SNFEVIR*L*FTIVRQG*NTKTNT---NSQYIRWAHGLEVKLTQRRAARL 68
            SNF+ +R L F+I   G    T T      +I W    EV  ++RR A +
Sbjct: 1151 SNFKALRELSFSISEFGKENATFTLLIKLVFINWGRFCEVSFSERRLANI 1200


>SPMIT.03 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial||Partial|Manual
          Length = 323

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 7/28 (25%), Positives = 17/28 (60%)
 Frame = +1

Query: 337 TWTFSSAAKCFYFEGNNSAIIYLYIVRI 420
           TW     + CF +   N+ +++++IV++
Sbjct: 14  TWKILDKSFCFKYSKKNTRLVFIFIVKM 41


>SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 589

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
 Frame = -3

Query: 424 HLYVLC---IGILSLNYFLQNKNI*LRSRMSR*FFIETL-LPSYLITSHTNHYII 272
           H  VLC    GIL +  F+ N+    R+R+      +TL L S ++TS  ++YI+
Sbjct: 312 HANVLCYLIFGILCIAGFVVNELYTTRTRIIAPSAFQTLSLSSVMVTSFLHYYIM 366


>SPAC3H1.14 ||SPAC9G1.01|cytoplasmic vesicle protein, Vid24
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 195

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 52  NGCLGPGGQHGVE*VSLQVHVPILYI 129
           NG    G Q GV   +L+VHV IL++
Sbjct: 9   NGAKFQGKQKGVSSSTLEVHVTILHV 34


>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -3

Query: 499 SPLPSTSSAVRDGVALVCADASRSRHLYVL 410
           S LPS++++ +DG  L  A++S SR   ++
Sbjct: 425 SSLPSSNASEKDGSILATANSSSSRRQTIM 454


>SPCC285.09c |cgs2|pde1|cAMP-specific phosphodiesterase
           Cgs2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 346

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 11/32 (34%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
 Frame = -3

Query: 283 HYIIEIHNFQHVINSI-WFNLTRSNFSNFEVI 191
           +Y+I+    +HV N++ W +L ++ F NF+V+
Sbjct: 142 NYVIDTLK-KHVFNNLLWPSLDKAGFINFQVV 172


>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +3

Query: 174 VNYSHLITSKLEKFERVRLNHI-ELIT 251
           +++  L + K E++ER RLN I +L+T
Sbjct: 11  ISFQELTSKKSEEYERKRLNEIGDLLT 37


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,696,311
Number of Sequences: 5004
Number of extensions: 54069
Number of successful extensions: 141
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)