Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30237
         (639 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_05_0038 - 18522642-18523533,18523593-18523694,18523787-18524202     31   0.77 
08_01_0612 + 5378190-5378251,5378926-5379244,5379381-5379671,538...    29   2.4  
07_03_1117 - 24096425-24097853,24097894-24098336                       28   5.4  
04_01_0069 - 697811-697876,697956-698166,698265-698359,698448-69...    28   5.4  
03_06_0371 + 33435936-33436472,33436554-33436741,33437146-334372...    28   5.4  
04_04_0927 + 29467121-29467168,29467518-29467604,29468180-294682...    28   7.2  
03_01_0026 + 246682-246866,247791-247915,248452-248625,249377-24...    28   7.2  
04_04_0757 - 27822139-27823530                                         27   9.5  

>11_05_0038 - 18522642-18523533,18523593-18523694,18523787-18524202
          Length = 469

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -3

Query: 556 GLTLRPT-TSVYACRAIRERSPLPSTSSAVRDGVALVCADASRSRHLYVLC 407
           G+  RP  TS Y  R  R R   P T     D  A++C D+ +S +  +LC
Sbjct: 198 GMVARPVLTSYYKSRHFRRRPDSPYTRYTSPDA-AILCPDSRQSMYAQLLC 247


>08_01_0612 +
           5378190-5378251,5378926-5379244,5379381-5379671,
           5380520-5380768,5380843-5380967,5381487-5381585,
           5381668-5382352
          Length = 609

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
 Frame = -3

Query: 502 RSPLPSTSSA----VRDGVALVCADASRSRHLYVLCIGILSLNYFLQNK 368
           RSPL  +SS     V  G+AL       SR L V+C G+L+   F+Q K
Sbjct: 11  RSPLSFSSSLCNAKVSCGLALHNVKIKSSRRLEVVCHGMLTTRKFMQKK 59


>07_03_1117 - 24096425-24097853,24097894-24098336
          Length = 623

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = -3

Query: 556 GLTLRPT-TSVYACRAIRERSPLPSTSSAVRDGVALVCADASRSRHLYVLCIGILSLNYF 380
           GLT RP  TS Y     + R P     +      A++CADA +S +  ++C G+   N  
Sbjct: 191 GLTARPVLTSYYKSDHFKNR-PYDPYHNYTSPTAAILCADAFQSMYAQMVC-GLCQRNDV 248

Query: 379 LQ 374
           L+
Sbjct: 249 LR 250


>04_01_0069 -
           697811-697876,697956-698166,698265-698359,698448-698513,
           698595-698643,698720-698770,698856-698908,699263-699331,
           699874-699928,700011-700099,700217-700302,700376-700432,
           700575-700716,701637-702032
          Length = 494

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 594 RIYKSRMVVPAGADLHYAPPPVYMHVERLENAAP 493
           +++  R V+P     H+APPP   HV     A+P
Sbjct: 24  QVFLRRSVLPPPPAPHHAPPPPGAHVHYFRAASP 57


>03_06_0371 +
           33435936-33436472,33436554-33436741,33437146-33437245,
           33437360-33437545,33438977-33439186,33439772-33439959,
           33440083-33440341
          Length = 555

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = -1

Query: 585 KSRMVVPAGADLHYAPPPVYMHVERLENAAPSLRRAAR*EMEWL 454
           + R+ +PA A     PPP +   E  E AAP++        EWL
Sbjct: 46  RRRLSMPASAVAAETPPP-HARAEEEEEAAPAVGGGEEGRFEWL 88


>04_04_0927 +
           29467121-29467168,29467518-29467604,29468180-29468269,
           29468547-29468741,29469056-29471080,29471208-29471354,
           29471520-29471923,29472015-29472144
          Length = 1041

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
 Frame = +3

Query: 453 RATPSLTALLVEGRGLRSLIALHAYTLVV--GRNVSPHRQEP-PSCSYIFGYTELDSHC 620
           R++P+L   L EGR + S++    +T  +   + +S   Q    SC  +FG+T  + +C
Sbjct: 575 RSSPTLVEAL-EGRDVESVVCGFNFTAAICLHKTMSMKDQSVCSSCQMVFGFTRKEHNC 632


>03_01_0026 +
           246682-246866,247791-247915,248452-248625,249377-249467,
           249516-250554
          Length = 537

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -3

Query: 532 SVYACRAIRERSPLPSTSSAVRDGV 458
           ++Y    IRER+P+PS  SA  DGV
Sbjct: 502 NLYEDLQIRERNPIPSLYSAQGDGV 526


>04_04_0757 - 27822139-27823530
          Length = 463

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -1

Query: 591 IYKSRMVVPAGADLHYAPPPVYMHVERL 508
           ++ S ++   G D+HYA PP ++   RL
Sbjct: 26  MHLSLLLASRGLDVHYAAPPAHLRQARL 53


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,982,651
Number of Sequences: 37544
Number of extensions: 371531
Number of successful extensions: 877
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)