Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30237
         (639 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49835| Best HMM Match : PKD_channel (HMM E-Value=1.2e-28)           28   7.4  
SB_16132| Best HMM Match : Somatostatin (HMM E-Value=0.42)             28   7.4  
SB_7818| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.7  

>SB_49835| Best HMM Match : PKD_channel (HMM E-Value=1.2e-28)
          Length = 1075

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = +3

Query: 54  WVFGSRRAARR*VSFTSSPCAHLIYCELVFVLVFYPCRTIVNYSHLITSKL 206
           W+    RA    VS T +P ++L +C + FV+ F P   +  Y  L  S+L
Sbjct: 825 WIDSQTRAVFTEVS-TYNPVSNL-FCAMTFVVEFLPTNGVYLYMDLKVSRL 873


>SB_16132| Best HMM Match : Somatostatin (HMM E-Value=0.42)
          Length = 307

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +3

Query: 93  SFTSSPCAHLIYCELVFVLVFYPCRTIVNYSHLITSKLEKFERVR 227
           S+ S+PC H+  C++++      C T+  Y H+        +RVR
Sbjct: 155 SYGSTPCDHVRPCKIIWKHTLRSCATV--YDHMEAHPAIMCDRVR 197


>SB_7818| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 170

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
 Frame = +3

Query: 96  FTSSPCAHLIYCELVF---VLVFYPCRTIVNYSHLITSKLEKFERVRLNHIEL 245
           F  S C  +I+ +L F   +L+ YP R IV  SHL+   +  + R+  + +EL
Sbjct: 49  FIESSC-RVIHIDLSFYRVILLIYPYRVIVLLSHLVELSISSY-RLSNHLVEL 99


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,476,971
Number of Sequences: 59808
Number of extensions: 425481
Number of successful extensions: 1143
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1044
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1143
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)