Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30237
         (639 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97011-2|AAB52325.2|  689|Caenorhabditis elegans Hypothetical pr...    31   0.53 
X83887-1|CAA58764.1|  498|Caenorhabditis elegans alpha-1 subunit...    29   3.7  
AY523511-1|AAR98633.1|  498|Caenorhabditis elegans acetylcholine...    29   3.7  
AF022973-7|AAN84815.1|  480|Caenorhabditis elegans Acetylcholine...    29   3.7  
AF022973-6|AAC25796.1|  498|Caenorhabditis elegans Acetylcholine...    29   3.7  
U61957-3|AAX55702.1|  395|Caenorhabditis elegans Temporarily ass...    28   4.9  
U61957-2|AAX55703.1|  386|Caenorhabditis elegans Temporarily ass...    28   4.9  
Z66500-2|CAA91304.2|  500|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>U97011-2|AAB52325.2|  689|Caenorhabditis elegans Hypothetical
           protein F31F7.2 protein.
          Length = 689

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -3

Query: 622 VQW-LSNSVYPNI*EQDGGSCRCGLTLRPTTSVYA 521
           ++W L+NS YP    Q+   C C L   PTTS+ A
Sbjct: 138 IEWSLANSTYPESKVQEAPYCPCELETCPTTSINA 172


>X83887-1|CAA58764.1|  498|Caenorhabditis elegans alpha-1 subunit of
           nicotinic acetylcholinereceptor protein.
          Length = 498

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = -1

Query: 630 LVLYNGCPTLYTRIYKSRMVVPAGADLHYAPPPVY 526
           ++LYN   T +   Y++ M+V +   +H+ PP ++
Sbjct: 109 VLLYNSVDTNFDSTYQTNMIVYSTGLVHWVPPGIF 143


>AY523511-1|AAR98633.1|  498|Caenorhabditis elegans acetylcholine
           receptor (57.1 kD)alternative variant 1 protein.
          Length = 498

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = -1

Query: 630 LVLYNGCPTLYTRIYKSRMVVPAGADLHYAPPPVY 526
           ++LYN   T +   Y++ M+V +   +H+ PP ++
Sbjct: 109 VLLYNSVDTNFDSTYQTNMIVYSTGLVHWVPPGIF 143


>AF022973-7|AAN84815.1|  480|Caenorhabditis elegans Acetylcholine
           receptor protein16, isoform b protein.
          Length = 480

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = -1

Query: 630 LVLYNGCPTLYTRIYKSRMVVPAGADLHYAPPPVY 526
           ++LYN   T +   Y++ M+V +   +H+ PP ++
Sbjct: 109 VLLYNSVDTNFDSTYQTNMIVYSTGLVHWVPPGIF 143


>AF022973-6|AAC25796.1|  498|Caenorhabditis elegans Acetylcholine
           receptor protein16, isoform a protein.
          Length = 498

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = -1

Query: 630 LVLYNGCPTLYTRIYKSRMVVPAGADLHYAPPPVY 526
           ++LYN   T +   Y++ M+V +   +H+ PP ++
Sbjct: 109 VLLYNSVDTNFDSTYQTNMIVYSTGLVHWVPPGIF 143


>U61957-3|AAX55702.1|  395|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 49, isoform a protein.
          Length = 395

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -2

Query: 620 TMAVQLCIPEYIRAGWW 570
           T  VQ C+P Y  AGWW
Sbjct: 194 TSIVQQCLPVYPDAGWW 210


>U61957-2|AAX55703.1|  386|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 49, isoform b protein.
          Length = 386

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -2

Query: 620 TMAVQLCIPEYIRAGWW 570
           T  VQ C+P Y  AGWW
Sbjct: 194 TSIVQQCLPVYPDAGWW 210


>Z66500-2|CAA91304.2|  500|Caenorhabditis elegans Hypothetical
           protein T05C12.2 protein.
          Length = 500

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/42 (23%), Positives = 22/42 (52%)
 Frame = -1

Query: 630 LVLYNGCPTLYTRIYKSRMVVPAGADLHYAPPPVYMHVERLE 505
           ++L+N     +   Y SR +V +  D+   PP ++  V +++
Sbjct: 112 VLLFNSVSESFDSTYSSRFIVSSNGDVQQNPPGIFRFVCQID 153


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,198,622
Number of Sequences: 27780
Number of extensions: 314046
Number of successful extensions: 773
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)