Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30237
         (639 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g01280.1 68418.m00037 expressed protein                             32   0.37 
At3g54720.1 68416.m06054 glutamate carboxypeptidase, putative  (...    28   4.5  
At2g33510.1 68415.m04108 expressed protein                             28   6.0  
At1g69440.1 68414.m07979 PAZ domain-containing protein / piwi do...    28   6.0  
At4g37390.1 68417.m05294 auxin-responsive GH3 family protein sim...    27   7.9  
At1g68480.1 68414.m07823 zinc finger (C2H2 type) family protein ...    27   7.9  

>At5g01280.1 68418.m00037 expressed protein
          Length = 460

 Score = 31.9 bits (69), Expect = 0.37
 Identities = 18/46 (39%), Positives = 27/46 (58%)
 Frame = -3

Query: 571 GSCRCGLTLRPTTSVYACRAIRERSPLPSTSSAVRDGVALVCADAS 434
           G+ R  +T  P TSVY+ R+ R R P+ S+ S+    V ++C D S
Sbjct: 407 GNFRHSVTKAPATSVYSVRSCRNR-PVSSSRSS-ESSVNILCLDGS 450


>At3g54720.1 68416.m06054 glutamate carboxypeptidase, putative
           (AMP1) identical to GI:15624092 glutamate
           carboxypeptidase {Arabidopsis thaliana}; ileal
           peptidase, Rattus norvegicus, EMBL:AF009921; identical
           to cDNA glutamate carboxypeptidase (AMP1) GI:15624091;
           contains Pfam profiles PF04389: Peptidase family M28,
           PF04253: Transferrin receptor-like dimerisation domain
           and PF02225 PA domain
          Length = 705

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 534 VVGRNVSPHRQEPPSCSYIF 593
           V G ++ P RQ PP CS++F
Sbjct: 11  VTGISIIPFRQPPPLCSFLF 30


>At2g33510.1 68415.m04108 expressed protein
          Length = 189

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 127 YIRWAHGLEVKLTQRRAARLDPNTHYSQPTV 35
           YI W +G+ VK   R+    DP++  S  TV
Sbjct: 76  YINWKNGMRVKEDPRKVMNADPDSGDSYGTV 106


>At1g69440.1 68414.m07979 PAZ domain-containing protein / piwi
           domain-containing protein similar to SP|Q9XGW1 PINHEAD
           protein (ZWILLE protein) {Arabidopsis thaliana};
           contains Pfam profiles PF02171: Piwi domain, PF02170:
           PAZ domain
          Length = 990

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +3

Query: 153 FYPCRTIVNYSHLITSKLEKFERVRLNHIELITC 254
           F+    I+N   L+ SKL++ +R   N+++LI C
Sbjct: 619 FFEPSHILNNISLLESKLKEIQRAASNNLQLIIC 652


>At4g37390.1 68417.m05294 auxin-responsive GH3 family protein
           similar to auxin-responsive GH3 product [Glycine max]
           GI:18591; contains Pfam profile PF03321: GH3
           auxin-responsive promoter
          Length = 603

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = -3

Query: 556 GLTLRPTTSVYACRAIRERSPLPSTSSAVRDGVALVCADASRSRHLYVLCIGIL 395
           GL  RP  + Y      +R P    +       A++C+D+S+S +  +LC G+L
Sbjct: 167 GLPARPVLTSYYKSDHFKRRPYDPYNVYTSPNEAILCSDSSQSMYAQMLC-GLL 219


>At1g68480.1 68414.m07823 zinc finger (C2H2 type) family protein
           contains Pfam profile: PF00096 zinc finger, C2H2 type
          Length = 253

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -1

Query: 609 PTLYTRIYKSRMVVPAGADLHYAPPP 532
           PT+Y  +Y S M+ P  +  +  P P
Sbjct: 111 PTIYRSVYSSPMIYPGSSSTNLVPQP 136


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,047,368
Number of Sequences: 28952
Number of extensions: 282982
Number of successful extensions: 643
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)