Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30236
(690 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces pombe... 36 0.006
SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces pomb... 31 0.16
SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom... 28 1.1
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce... 28 1.1
SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces p... 28 1.1
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 28 1.1
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz... 28 1.1
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 28 1.5
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 28 1.5
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc... 27 3.4
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc... 27 3.4
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma... 26 4.5
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 26 4.5
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 5.9
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 7.8
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb... 25 7.8
>SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 565
Score = 35.9 bits (79), Expect = 0.006
Identities = 45/141 (31%), Positives = 61/141 (43%), Gaps = 19/141 (13%)
Frame = +2
Query: 44 GLNESLSDWIKKHVDETPLCILTPIFRDYEAYLKEIQEEYHGPDGDCSEIETK--KNVNS 217
GLN+S D + K VD P L+P+F +Y + I+++ +G+ + T NV
Sbjct: 98 GLNKSFIDAVIKSVDNNPFGNLSPLFDEYRQHFSSIEKK--PAEGNAFIVSTSFLSNVFL 155
Query: 218 E--TKNPVEKSKN---GIFSESSRDLTVSGSSIFKLDPSKP----------FSTTPLSSS 352
E T N V N +SS +T +S K D KP FS L SS
Sbjct: 156 EQPTSNAVVSEVNPQQQKSQDSSSFVTEKPASSEKEDKEKPLVPPGAPRFGFSAPALGSS 215
Query: 353 --CNMLGDKPKGFSFGINTAT 409
N PKG SFG +AT
Sbjct: 216 FQFNSSAFTPKG-SFGEKSAT 235
>SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 31.1 bits (67), Expect = 0.16
Identities = 21/60 (35%), Positives = 27/60 (45%)
Frame = +2
Query: 203 KNVNSETKNPVEKSKNGIFSESSRDLTVSGSSIFKLDPSKPFSTTPLSSSCNMLGDKPKG 382
KN S T N +E K + RD S S+ DP++P T P+ SC G P G
Sbjct: 104 KNNISGTINLIECMKK----YNVRDFVFSSSATVYGDPTRPGGTIPIPESCPREGTSPYG 159
>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 561
Score = 28.3 bits (60), Expect = 1.1
Identities = 16/61 (26%), Positives = 25/61 (40%)
Frame = +2
Query: 506 FGLKSSPSSDGSPLKFGAPSLTSTNTNNTEPANQEDEDVPPKVEFTPIAEENSVFDKRCK 685
FG S P+S L S ++N+N+ E N E +D + + N + R
Sbjct: 473 FGTPSDPNSSSQSLGNEVLSRPNSNSNSAESRNGETDDSGESETYFTLMNNNKGVEPRAS 532
Query: 686 V 688
V
Sbjct: 533 V 533
>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 351
Score = 28.3 bits (60), Expect = 1.1
Identities = 21/61 (34%), Positives = 30/61 (49%)
Frame = +2
Query: 191 IETKKNVNSETKNPVEKSKNGIFSESSRDLTVSGSSIFKLDPSKPFSTTPLSSSCNMLGD 370
+ET+KN+NS+T E K+ S DL IFKL+ ++ PLS N +
Sbjct: 138 LETEKNLNSKTS---ESLKSPTLSYPF-DLDSLDKRIFKLESKIGYADEPLSELLNKCME 193
Query: 371 K 373
K
Sbjct: 194 K 194
>SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 473
Score = 28.3 bits (60), Expect = 1.1
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +2
Query: 515 KSSPSSDGSPLKFGAPSLTSTNTNNTEPANQEDEDVPPKVEFTPI 649
+ SPS+D + ++ S NNT P N + ED P P+
Sbjct: 132 RQSPSADQT-VQPQPGSTNQQQQNNTNPINNQPEDTKPNTNSPPV 175
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1778
Score = 28.3 bits (60), Expect = 1.1
Identities = 19/70 (27%), Positives = 35/70 (50%)
Frame = +2
Query: 212 NSETKNPVEKSKNGIFSESSRDLTVSGSSIFKLDPSKPFSTTPLSSSCNMLGDKPKGFSF 391
+++T N + G+F ++ + T +G S+F +KP STT N +P +
Sbjct: 543 STQTNNATSNTGTGLFGSNNANTTNTGGSLF----NKP-STTTGGLFGNTTAQQPSTTTS 597
Query: 392 GINTATSTIN 421
G+ A++T N
Sbjct: 598 GLFGASNTNN 607
>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 28.3 bits (60), Expect = 1.1
Identities = 21/58 (36%), Positives = 27/58 (46%)
Frame = +2
Query: 215 SETKNPVEKSKNGIFSESSRDLTVSGSSIFKLDPSKPFSTTPLSSSCNMLGDKPKGFS 388
S T N + S+ G + SR + SGS STTPL++S N P GFS
Sbjct: 417 SSTMNSLNSSRFGAYFSKSRYVEGSGS----------MSTTPLATSVNNSYKLPSGFS 464
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 27.9 bits (59), Expect = 1.5
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +2
Query: 128 YEAYLKEIQEEYHGPDGDCSEIETKKNVNSETKNPVEKSKNGIFS 262
Y+ ++E +E D C+E E++ + K +E SKN + S
Sbjct: 301 YKPIIEENMQELSNSDDICAEKESRLKLVLSEKAKLEDSKNSVLS 345
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 27.9 bits (59), Expect = 1.5
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = +2
Query: 557 APSLTSTNT--NNTEPANQEDEDVPPKVEFTPIAEENSVFD 673
AP+ ++TNT NT P N + P P+A E + D
Sbjct: 234 APNRSATNTPVENTHPENPDSNTSTPTTRSEPLAGEGASID 274
>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
Shk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 658
Score = 26.6 bits (56), Expect = 3.4
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = +2
Query: 221 TKNPVEKSKNGIFSESSRDLTVSGSSIFKLDPSKPFSTTPLSSSCNML 364
T+ P+ S + + S S T + SS +L PS+P T P SSS + L
Sbjct: 223 TEKPL-LSVSALSSSSHLQPTSATSSSSRLYPSRPAPTPPASSSSSPL 269
>SPBC336.12c |cdc10||MBF transcription factor complex subunit
Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 26.6 bits (56), Expect = 3.4
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = +2
Query: 212 NSETKNPVEKSKNGIFSESSRDLTVSGSSIFKLDPSKPFSTTPLSSSCNMLGDKP 376
N NP + SKNG+ + ++ + S SS F L P + + S N L P
Sbjct: 200 NHNFSNPSKSSKNGVHTINNMQSSPSPSSSFLL-PLTQIDSQNVKRSNNYLSTSP 253
>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 358
Score = 26.2 bits (55), Expect = 4.5
Identities = 23/80 (28%), Positives = 36/80 (45%)
Frame = +2
Query: 185 SEIETKKNVNSETKNPVEKSKNGIFSESSRDLTVSGSSIFKLDPSKPFSTTPLSSSCNML 364
S I + +++ + P+ S + + SS +S S+I P S+TP SSS
Sbjct: 83 SSILSNSTISTSSSTPITAS---VPTSSS---ILSNSTIPTTSPVPTTSSTPTSSSILSN 136
Query: 365 GDKPKGFSFGINTATSTINS 424
P S +T T+TI S
Sbjct: 137 STIPSSSSISASTITTTIIS 156
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 26.2 bits (55), Expect = 4.5
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = +2
Query: 518 SSPSSDGSPLKFGAPSLTSTNTNNTEPANQEDED 619
SSP+ SP + N N+ + N+E+E+
Sbjct: 300 SSPNKSSSPTSIEISDFSKNNENHDQSENKEEEE 333
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 25.8 bits (54), Expect = 5.9
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 10/95 (10%)
Frame = +2
Query: 170 PDGDCSEIETKKNVNSET---KNPVEKSKNGIFSESSRDLTVSGSSIFKLDPSKPF---- 328
P+ ++I + VNS T + V S I S S + + +S L+ S P
Sbjct: 365 PENTSTQITSPTAVNSSTPITSSSVLNSSTPITSSSILNTSTPITSSSVLNSSTPITSSS 424
Query: 329 ---STTPLSSSCNMLGDKPKGFSFGINTATSTINS 424
S+TP++SS + P S +NT+T +S
Sbjct: 425 ILNSSTPITSSTVLNSSTPITSSTALNTSTPITSS 459
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 7.8
Identities = 29/132 (21%), Positives = 53/132 (40%), Gaps = 1/132 (0%)
Frame = +2
Query: 212 NSETKNPVEKSKNGIFSESSRDLTVSGSSIFKLDPSKPFSTTPLSSSCNMLGDKPKGFSF 391
+S + + + S + S +S T+S SS P+ ST +SSS + S
Sbjct: 266 SSSSSSIISSSSSSSSSPTSTSSTISSSSSSSSSPTSTSST--ISSSSSSSSSFSSTLSS 323
Query: 392 GINTATSTINSIPAIXXXXXXXXXXXXXXXXXXXXXFSFGLKSSPSSD-GSPLKFGAPSL 568
+++S+ +S P S SS SS S + +L
Sbjct: 324 SSMSSSSSFSSSPTSSSSTISSSSSSPSSSSFSSTTSSSKSSSSFSSTVSSSSSTSSSTL 383
Query: 569 TSTNTNNTEPAN 604
TS++++++ PA+
Sbjct: 384 TSSSSSSSRPAS 395
>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 827
Score = 25.4 bits (53), Expect = 7.8
Identities = 10/27 (37%), Positives = 20/27 (74%)
Frame = +2
Query: 143 KEIQEEYHGPDGDCSEIETKKNVNSET 223
+E +EE++G + + E E +++VNS+T
Sbjct: 350 QENEEEWNGINEEAEESEDEESVNSDT 376
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,536,238
Number of Sequences: 5004
Number of extensions: 52095
Number of successful extensions: 279
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 271
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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