Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30236
(690 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0404 + 22626709-22628601 33 0.28
05_01_0454 + 3610608-3613136 29 2.6
03_05_0932 + 28924891-28924935,28925982-28926062,28926464-289265... 29 3.5
11_01_0220 + 1717861-1717979,1718149-1718281,1718544-1718723,171... 29 4.6
07_01_0221 - 1635381-1637477 29 4.6
01_01_0571 - 4233769-4234239,4234340-4234378,4234712-4234839,423... 29 4.6
02_05_0481 + 29361542-29361669,29362091-29362341,29362820-293630... 28 6.1
02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,162... 28 8.0
02_01_0061 + 442288-442411,442445-445498,445630-446000 28 8.0
>02_04_0404 + 22626709-22628601
Length = 630
Score = 32.7 bits (71), Expect = 0.28
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Frame = +2
Query: 86 DETPLCILTPIFRDYEAYLKEIQEEYHGPDGDCSEIETKKN------VNSETKNPVEKSK 247
D T + +L+P+ R Y A +E +EY GD S + KN NS + +P S
Sbjct: 360 DATGVKMLSPLPRKYVALAEEEDDEYVDICGDASPVVLHKNHGEIIISNSSSSSPSSDSD 419
Query: 248 NGIFSESSRDLTVSGSS 298
+ S SS + S SS
Sbjct: 420 SDSNSSSSSSSSSSSSS 436
>05_01_0454 + 3610608-3613136
Length = 842
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Frame = +2
Query: 512 LKSSPSSDGSPLKFGAPSLTSTNTNNTEP---ANQEDEDVPPKVEFTPIAEENSVFDKR 679
L S PSS +PL A S ST T T + + D ++ F + E + FD++
Sbjct: 450 LTSRPSSSWTPLSLNALSFLSTGTRTTSRTTYTSGTNSDTSYRIPFVVLQEATNHFDEQ 508
>03_05_0932 +
28924891-28924935,28925982-28926062,28926464-28926512,
28926599-28926677,28926762-28926921,28927307-28927440,
28927814-28927882,28928064-28928151,28928396-28928471,
28929267-28929340,28929478-28929585,28929858-28930160,
28930483-28930587,28930670-28930750,28930838-28931852,
28932086-28932201
Length = 860
Score = 29.1 bits (62), Expect = 3.5
Identities = 18/58 (31%), Positives = 26/58 (44%)
Frame = +2
Query: 146 EIQEEYHGPDGDCSEIETKKNVNSETKNPVEKSKNGIFSESSRDLTVSGSSIFKLDPS 319
EI + +G IE + V S + E SKNGI++ S+I+ LD S
Sbjct: 569 EINKRLDSNNGQNGYIEDENCVVSASNTDDENSKNGIYNPEPGQFDQLTSNIYDLDSS 626
>11_01_0220 +
1717861-1717979,1718149-1718281,1718544-1718723,
1719046-1719126,1719259-1719422,1719518-1719654,
1719900-1720015,1720134-1720367
Length = 387
Score = 28.7 bits (61), Expect = 4.6
Identities = 18/72 (25%), Positives = 32/72 (44%)
Frame = +2
Query: 77 KHVDETPLCILTPIFRDYEAYLKEIQEEYHGPDGDCSEIETKKNVNSETKNPVEKSKNGI 256
+HV + +LTP R +EA L +E SE +K N+N K + + ++ +
Sbjct: 156 RHVPDVRFPVLTPNLRGFEAALAAGAKEV-AVFASASESFSKSNLNCTIKESLVRYRDVV 214
Query: 257 FSESSRDLTVSG 292
S + + G
Sbjct: 215 TSAKKHGMRIRG 226
>07_01_0221 - 1635381-1637477
Length = 698
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/56 (25%), Positives = 31/56 (55%)
Frame = +2
Query: 257 FSESSRDLTVSGSSIFKLDPSKPFSTTPLSSSCNMLGDKPKGFSFGINTATSTINS 424
++ +++ +TV+ + + PSKP ++ S + D+P + G ++AT + NS
Sbjct: 227 YNGTAKQITVAMAPLKMAKPSKPLLSSTYDLSTVFVADEP--YMVGFSSATGSFNS 280
>01_01_0571 -
4233769-4234239,4234340-4234378,4234712-4234839,
4235329-4235470,4235519-4235905,4236045-4236230,
4236382-4236659,4236757-4236883,4237270-4237442,
4237610-4237657,4237734-4237767,4237837-4237965,
4238865-4238960,4239419-4239485,4240030-4240085,
4240522-4240617,4241127-4242222,4243221-4243402
Length = 1244
Score = 28.7 bits (61), Expect = 4.6
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = +2
Query: 86 DETPLCILTPIFRDYEAYLKEIQEEYHGPDGD-CSEI-ETKKNVNSETKNPVEKSKNGIF 259
D +PL TP+ R LK +QE+ D CS K V +PVE +
Sbjct: 300 DPSPLKPETPVMRAVIPRLKRVQEDQRVTTNDSCSPFWGPNKKVKPAQCSPVENKVHDEM 359
Query: 260 SESSR 274
+ES+R
Sbjct: 360 AESAR 364
>02_05_0481 + 29361542-29361669,29362091-29362341,29362820-29363002,
29363099-29363206,29363583-29363697,29363781-29364819,
29364904-29365014,29365268-29365326,29366601-29366763,
29367162-29367435,29367530-29367680,29367766-29367877,
29367978-29368143,29368261-29368331,29368474-29368565,
29368721-29368883,29369134-29369205,29369236-29369263,
29369519-29369910,29369991-29370106,29370201-29370498,
29370820-29371139,29371332-29371590,29371985-29372302,
29372423-29372527,29372648-29372776,29374001-29374381,
29374467-29374604,29374949-29375185,29375264-29375569
Length = 2094
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/49 (34%), Positives = 29/49 (59%)
Frame = +2
Query: 158 EYHGPDGDCSEIETKKNVNSETKNPVEKSKNGIFSESSRDLTVSGSSIF 304
E++GP D S+ E + + + K+ V +SKNG+F S +D + SI+
Sbjct: 1889 EWNGPWSDSSQ-EWTERMKHKLKH-VPQSKNGVFWMSWQDFQIHFRSIY 1935
>02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,
1625603-1625887,1626016-1626030,1626339-1626419,
1626909-1627322,1627423-1627719,1627801-1629864
Length = 3057
Score = 27.9 bits (59), Expect = 8.0
Identities = 17/65 (26%), Positives = 29/65 (44%)
Frame = +2
Query: 47 LNESLSDWIKKHVDETPLCILTPIFRDYEAYLKEIQEEYHGPDGDCSEIETKKNVNSETK 226
+ E L+D + +H E + T + +KE EE +GP+ + + KN N +
Sbjct: 2014 VTEMLNDEVTQHEPEDSIPRTTDAMVENITEIKEETEEENGPNSGGTLEVSAKNYNEDVH 2073
Query: 227 NPVEK 241
EK
Sbjct: 2074 ENTEK 2078
>02_01_0061 + 442288-442411,442445-445498,445630-446000
Length = 1182
Score = 27.9 bits (59), Expect = 8.0
Identities = 21/76 (27%), Positives = 33/76 (43%)
Frame = -1
Query: 411 LVAVFIPKENPFGLSPSILQELLNGVVENGLDGSNLNIDDPDTVRSLLDSEKIPFFDFST 232
L+ + + + N GL P + L + E LDG+N N P + EK+ F S
Sbjct: 591 LLVLSLAQNNLSGLIPDSIGNLAQ-LTEFHLDGNNFNGSIPSNLGQWRQLEKLDFSHNSF 649
Query: 231 GFFVSELTFFFVSISE 184
G + F S+S+
Sbjct: 650 GGSLPSEVFNISSLSQ 665
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,891,258
Number of Sequences: 37544
Number of extensions: 279129
Number of successful extensions: 1031
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1029
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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