Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30236
         (690 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43153| Best HMM Match : No HMM Matches (HMM E-Value=.)              49   4e-06
SB_54008| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_38188| Best HMM Match : rve (HMM E-Value=5.7e-31)                   29   2.7  
SB_799| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   2.7  
SB_41532| Best HMM Match : Extensin_2 (HMM E-Value=1.4)                29   2.7  
SB_31796| Best HMM Match : SAP (HMM E-Value=3.5e-10)                   29   3.6  
SB_50937| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_40488| Best HMM Match : HEAT (HMM E-Value=6.3e-08)                  28   6.2  
SB_25488| Best HMM Match : Death (HMM E-Value=1.4e-12)                 28   6.2  
SB_10762| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_43491| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_34468| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.1  
SB_30605| Best HMM Match : DUF601 (HMM E-Value=1.7)                    28   8.2  
SB_5064| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.2  
SB_40530| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  
SB_35866| Best HMM Match : TPR_MLP1_2 (HMM E-Value=0.34)               28   8.2  

>SB_43153| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 380

 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 18/36 (50%), Positives = 26/36 (72%)
 Frame = +2

Query: 47  LNESLSDWIKKHVDETPLCILTPIFRDYEAYLKEIQ 154
           LN+ +SDW++KHV   P   LTP+F DY  ++KEI+
Sbjct: 111 LNQGVSDWVQKHVTSNPYIDLTPVFDDYRKHMKEIE 146


>SB_54008| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1940

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 539 SPLKFGAPSLTSTNTNNTEPANQEDEDVPPK 631
           SPLK   P   S + NNT+ A+Q D +  P+
Sbjct: 17  SPLKLDPPYQVSCSINNTKTAHQHDHNKEPR 47


>SB_38188| Best HMM Match : rve (HMM E-Value=5.7e-31)
          Length = 836

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
 Frame = +2

Query: 143 KEIQEEYHGPDGDCSEIETKKNVNSETKNPVEKSKNGIFSES--SRDLTVSGSSIFKLDP 316
           +E  ++Y   + D SE+E  +N+N    + + K  + + SES  +  L V+    F +  
Sbjct: 354 EECSDDYVFNENDFSELEASQNMNVSNIDGLCKDVSSLTSESIIASSLGVAVGPFFNIRK 413

Query: 317 SKPFSTTPLSSSCNMLGD 370
                    S SC+  GD
Sbjct: 414 ESLECDAAPSPSCSSFGD 431


>SB_799| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 370

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -2

Query: 266 IQKKFHFLIFQQDFLFLN*HSFLSQFQSNHHLVHDTLPVFL 144
           + K F  ++++  + FL  H FL + QS    +H T+   L
Sbjct: 298 VAKVFERIVYELFYAFLEKHDFLCKNQSGFRSIHSTMTALL 338


>SB_41532| Best HMM Match : Extensin_2 (HMM E-Value=1.4)
          Length = 1633

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +2

Query: 509 GLKSSPSSDGSPLKFGAPSLTSTNTNNTEPANQEDEDVPPK 631
           GL +  S D SPLK   PS++   +N   P   + +  P K
Sbjct: 640 GLVNELSDDESPLKRCMPSISKPESNQPRPTKVKSQTTPVK 680


>SB_31796| Best HMM Match : SAP (HMM E-Value=3.5e-10)
          Length = 1029

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +2

Query: 542 PLKF-GAPSLTSTNTNNTEPANQEDEDVPPKVE 637
           P +F G PS+   +T NT   N  +E+ P K+E
Sbjct: 328 PCQFVGLPSIPENSTKNTTSNNNNNEEKPVKIE 360


>SB_50937| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2480

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
 Frame = +2

Query: 107  LTPIFRDYEAYLKEIQEEYHGPDGDCS-EI-ETKKNVNSETKNPVEKSKNGI 256
            +TP+ RDY   LKE  ++    D D S E+ ETKK V  ETK  V+++K  +
Sbjct: 1268 VTPLERDYVTLLKEWVDK----DLDLSKEVNETKKEV-QETKKDVQETKKEV 1314



 Score = 28.3 bits (60), Expect = 6.2
 Identities = 27/73 (36%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
 Frame = +2

Query: 65   DWIKKHVDETPLCILTPIFRDYEAYLKEIQEEYHGPDGDCSEI-ETKKNVNSETKNPVEK 241
            D  K  VDET   +     +D +   KE+QE     D    E+ ETKK +  ETK  V +
Sbjct: 1315 DETKTKVDETKKEV-QETKKDVQETKKEVQETKTKVDETNKEVQETKKEI-QETKKDVHE 1372

Query: 242  SKNGIFSESSRDL 280
             K G  SE + DL
Sbjct: 1373 VK-GKVSEMAVDL 1384


>SB_40488| Best HMM Match : HEAT (HMM E-Value=6.3e-08)
          Length = 1185

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 19/62 (30%), Positives = 33/62 (53%)
 Frame = -1

Query: 258 KIPFFDFSTGFFVSELTFFFVSISEQSPSGP*YSSCISFKYAS*SLNIGVKMHKGVSSTC 79
           + P+F  ++G   S  + F + I   +   P Y SC ++++    L I + +H G+SSTC
Sbjct: 791 RAPYFSCASGIS-STCSLFLLCIQASAVRAP-YFSC-AYRHQQYVLLISL-VHTGISSTC 846

Query: 78  FL 73
            L
Sbjct: 847 SL 848


>SB_25488| Best HMM Match : Death (HMM E-Value=1.4e-12)
          Length = 387

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +2

Query: 572 STNTNNTEPANQEDEDVPPKVEFTPIAEENSVFDKRCKV 688
           S +++   P   E+    P+V+F P  EEN++ D+  +V
Sbjct: 205 SRHSSTPRPVTVENNTNNPQVQFIPTTEENNMADRAPEV 243


>SB_10762| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 647

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = +2

Query: 77  KHVDETPLCILTPIFRDYEAYLKEIQEEYHGPDGDCSEIETKKNVNSETKNPVEK 241
           + + E  L    P+F+D EA  KE  EE+     D   ++ KK+    +    EK
Sbjct: 447 REIWEGSLNTTKPVFKDLEAQFKERTEEFEKMKKDVVGLKNKKSSLETSVQRAEK 501


>SB_43491| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 98

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = -3

Query: 463 RSPKREPCAYCWNAIYSACSC 401
           R P      YCWN I SA SC
Sbjct: 78  RRPNSTTVDYCWNTIISAYSC 98


>SB_34468| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 490

 Score = 25.8 bits (54), Expect(2) = 7.1
 Identities = 33/129 (25%), Positives = 53/129 (41%), Gaps = 6/129 (4%)
 Frame = +2

Query: 56  SLSDWIKKHVDETPLCILTPIFRDYEAY--LKEIQEEYHGPD----GDCSEIETKKNVNS 217
           SLS+ +K  V +T +  L  +  +Y  Y      + +Y G D    GD  E +TK   N 
Sbjct: 194 SLSE-VKTRVMDTTMHPLAQL-ANYLGYGWCSSCRAQYVGEDFRRNGDSWEADTKGPCNG 251

Query: 218 ETKNPVEKSKNGIFSESSRDLTVSGSSIFKLDPSKPFSTTPLSSSCNMLGDKPKGFSFGI 397
           E  +   K   G F+   +++T     +  + PS  +S T  +   + L  K +      
Sbjct: 252 ERSHQRLKIHFGDFTFKIKNITYGTPVVQTMRPSVHYSGTIRNDDSSPLTHKVEREVRDT 311

Query: 398 NTATSTINS 424
            T T T  S
Sbjct: 312 RTVTHTTTS 320



 Score = 20.6 bits (41), Expect(2) = 7.1
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 524 PSSDGSPLKFGAPSLTSTNTNNTEPANQEDED 619
           P+S G+ + F     TST T ++E   Q+  D
Sbjct: 337 PTSFGAKVAFKFNYETSTTTTDSETNTQQFVD 368


>SB_30605| Best HMM Match : DUF601 (HMM E-Value=1.7)
          Length = 329

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 19/74 (25%), Positives = 33/74 (44%)
 Frame = +2

Query: 131 EAYLKEIQEEYHGPDGDCSEIETKKNVNSETKNPVEKSKNGIFSESSRDLTVSGSSIFKL 310
           EA   EI+   H P   CS+ +T   V S    PV K+ + +  + S ++ +  S   + 
Sbjct: 99  EATSSEIENPSHVPRDSCSKSQTFNPVRSGV--PVSKNLSNLRKDFSSEILIDTSITIQR 156

Query: 311 DPSKPFSTTPLSSS 352
             +    T  L+S+
Sbjct: 157 FSNSKIKTCNLTST 170


>SB_5064| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 711

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +2

Query: 125 DYEAYLKEIQEEYHGPDGDCSEIETKKNVNSETKNPVEKSKNGIFSESSRD 277
           DY++  K +  E + P   C    T+ N+ S  +NP +   NG  SES+ +
Sbjct: 464 DYDSSFKHLLYELN-PALSCCLDTTEDNLISHIENPSKLHSNGRISESTSE 513


>SB_40530| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1033

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
 Frame = +2

Query: 107 LTPIFRDYEAYLKEIQEEYHGPDGDCS-EI-ETKKNVNSETKNPVEKSK 247
           +TP+ RDY   LKE  ++    D D S E+ ETKK V  ETK  V+++K
Sbjct: 172 VTPLERDYVTLLKEWVDK----DLDLSKEVNETKKEV-QETKKEVQETK 215


>SB_35866| Best HMM Match : TPR_MLP1_2 (HMM E-Value=0.34)
          Length = 758

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
 Frame = +2

Query: 125 DYEAYLKEIQEEYHGPDGDCSEIETKKNVNSETKNPVEKSKNGIFSESSRDLTVSG-SSI 301
           +YE  ++E+Q E      +C E++   N N   ++ V++   G   E + DL + G S  
Sbjct: 442 EYEGQIRELQNENLDLRKECLELD---NENKILEDEVKQLSEGSTPEGN-DLDIYGRSEK 497

Query: 302 FKLDPSKPFSTTPLSSSCNMLGD 370
             LD   P S+  L +    L D
Sbjct: 498 LCLDDEVPISSCELEAFETRLSD 520


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,555,128
Number of Sequences: 59808
Number of extensions: 331214
Number of successful extensions: 1229
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1089
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1221
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)