Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30236
(690 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF107840-1|AAD53401.1| 468|Homo sapiens nuclear pore-associated... 89 2e-17
Z82243-1|CAI17926.1| 468|Homo sapiens nucleoporin 50kDa protein. 87 4e-17
CR456533-1|CAG30419.1| 468|Homo sapiens NUP50 protein. 87 4e-17
BC070133-1|AAH70133.1| 468|Homo sapiens nucleoporin 50kDa protein. 87 4e-17
BC028125-1|AAH28125.1| 440|Homo sapiens nucleoporin 50kDa protein. 87 4e-17
BC016055-1|AAH16055.1| 440|Homo sapiens NUP50 protein protein. 87 4e-17
AL008718-1|CAI17944.1| 468|Homo sapiens nucleoporin 50kDa protein. 87 4e-17
U20979-1|AAA76736.1| 938|Homo sapiens chromatin assembly factor... 31 3.9
BC067093-1|AAH67093.1| 956|Homo sapiens chromatin assembly fact... 31 5.1
AF190465-2|AAF04291.1| 938|Homo sapiens chromatin assembly fact... 31 5.1
BC088365-1|AAH88365.2| 435|Homo sapiens PTD016 protein protein. 30 6.8
AK098649-1|BAC05364.1| 252|Homo sapiens protein ( Homo sapiens ... 30 6.8
>AF107840-1|AAD53401.1| 468|Homo sapiens nuclear pore-associated
protein protein.
Length = 468
Score = 88.6 bits (210), Expect = 2e-17
Identities = 64/214 (29%), Positives = 96/214 (44%)
Frame = +2
Query: 47 LNESLSDWIKKHVDETPLCILTPIFRDYEAYLKEIQEEYHGPDGDCSEIETKKNVNSETK 226
LN S+ DWI KHV+ PLC LTPIF+DYE YL I E+ HG G SE E+ K V +ET+
Sbjct: 163 LNCSVRDWIVKHVNTNPLCDLTPIFKDYEKYLANI-EQQHGNSGRNSESESNK-VAAETQ 220
Query: 227 NPVEKSKNGIFSESSRDLTVSGSSIFKLDPSKPFSTTPLSSSCNMLGDKPKGFSFGINTA 406
+P + ESS G+ K + + + LG F+FG
Sbjct: 221 SPSLFGSTKLQQESS--FLFHGNKTEDTPDKKMEVASEKKTDPSSLGATSASFNFGKKVD 278
Query: 407 TSTINSIPAIXXXXXXXXXXXXXXXXXXXXXFSFGLKSSPSSDGSPLKFGAPSLTSTNTN 586
+S + S+ ++ +S P S P K ++
Sbjct: 279 SSVLGSLSSVPLTGFSFSPGNSSLFGKDT------TQSKPVSSPFPTK-PLEGQAEGDSG 331
Query: 587 NTEPANQEDEDVPPKVEFTPIAEENSVFDKRCKV 688
+ ++E+ D PPKV T + EE++ + K+CK+
Sbjct: 332 ECKGGDEEENDEPPKVVVTEVKEEDAFYSKKCKL 365
>Z82243-1|CAI17926.1| 468|Homo sapiens nucleoporin 50kDa protein.
Length = 468
Score = 87.4 bits (207), Expect = 4e-17
Identities = 63/214 (29%), Positives = 96/214 (44%)
Frame = +2
Query: 47 LNESLSDWIKKHVDETPLCILTPIFRDYEAYLKEIQEEYHGPDGDCSEIETKKNVNSETK 226
LN S+ DWI KHV+ PLC LTPIF+DYE YL I E+ HG G SE E+ K V +ET+
Sbjct: 163 LNCSVRDWIVKHVNTNPLCDLTPIFKDYEKYLANI-EQQHGNSGRNSESESNK-VAAETQ 220
Query: 227 NPVEKSKNGIFSESSRDLTVSGSSIFKLDPSKPFSTTPLSSSCNMLGDKPKGFSFGINTA 406
+P + ES+ G+ K + + + LG F+FG
Sbjct: 221 SPSLFGSTKLQQEST--FLFHGNKTEDTPDKKMEVASEKKTDPSSLGATSASFNFGKKVD 278
Query: 407 TSTINSIPAIXXXXXXXXXXXXXXXXXXXXXFSFGLKSSPSSDGSPLKFGAPSLTSTNTN 586
+S + S+ ++ +S P S P K ++
Sbjct: 279 SSVLGSLSSVPLTGFSFSPGNSSLFGKDT------TQSKPVSSPFPTK-PLEGQAEGDSG 331
Query: 587 NTEPANQEDEDVPPKVEFTPIAEENSVFDKRCKV 688
+ ++E+ D PPKV T + EE++ + K+CK+
Sbjct: 332 ECKGGDEEENDEPPKVVVTEVKEEDAFYSKKCKL 365
>CR456533-1|CAG30419.1| 468|Homo sapiens NUP50 protein.
Length = 468
Score = 87.4 bits (207), Expect = 4e-17
Identities = 63/214 (29%), Positives = 96/214 (44%)
Frame = +2
Query: 47 LNESLSDWIKKHVDETPLCILTPIFRDYEAYLKEIQEEYHGPDGDCSEIETKKNVNSETK 226
LN S+ DWI KHV+ PLC LTPIF+DYE YL I E+ HG G SE E+ K V +ET+
Sbjct: 163 LNCSVRDWIVKHVNTNPLCDLTPIFKDYEKYLANI-EQQHGNSGRNSESESNK-VAAETQ 220
Query: 227 NPVEKSKNGIFSESSRDLTVSGSSIFKLDPSKPFSTTPLSSSCNMLGDKPKGFSFGINTA 406
+P + ES+ G+ K + + + LG F+FG
Sbjct: 221 SPSLFGSTKLQQEST--FLFHGNKTEDTPDKKMEVASEKKTDPSSLGATSASFNFGKKVD 278
Query: 407 TSTINSIPAIXXXXXXXXXXXXXXXXXXXXXFSFGLKSSPSSDGSPLKFGAPSLTSTNTN 586
+S + S+ ++ +S P S P K ++
Sbjct: 279 SSVLGSLSSVPLTGFSFSPGNSSLFGKDT------TQSKPVSSPFPTK-PLEGQAEGDSG 331
Query: 587 NTEPANQEDEDVPPKVEFTPIAEENSVFDKRCKV 688
+ ++E+ D PPKV T + EE++ + K+CK+
Sbjct: 332 ECKGGDEEENDEPPKVVVTEVKEEDAFYSKKCKL 365
>BC070133-1|AAH70133.1| 468|Homo sapiens nucleoporin 50kDa protein.
Length = 468
Score = 87.4 bits (207), Expect = 4e-17
Identities = 63/214 (29%), Positives = 96/214 (44%)
Frame = +2
Query: 47 LNESLSDWIKKHVDETPLCILTPIFRDYEAYLKEIQEEYHGPDGDCSEIETKKNVNSETK 226
LN S+ DWI KHV+ PLC LTPIF+DYE YL I E+ HG G SE E+ K V +ET+
Sbjct: 163 LNCSVRDWIVKHVNTNPLCDLTPIFKDYEKYLANI-EQQHGNSGRNSESESNK-VAAETQ 220
Query: 227 NPVEKSKNGIFSESSRDLTVSGSSIFKLDPSKPFSTTPLSSSCNMLGDKPKGFSFGINTA 406
+P + ES+ G+ K + + + LG F+FG
Sbjct: 221 SPSLFGSTKLQQEST--FLFHGNKTEDTPDKKMEVASEKKTDPSSLGATSASFNFGKKVD 278
Query: 407 TSTINSIPAIXXXXXXXXXXXXXXXXXXXXXFSFGLKSSPSSDGSPLKFGAPSLTSTNTN 586
+S + S+ ++ +S P S P K ++
Sbjct: 279 SSVLGSLSSVPLTGFSFSPGNSSLFGKDT------TQSKPVSSPFPTK-PLEGQAEGDSG 331
Query: 587 NTEPANQEDEDVPPKVEFTPIAEENSVFDKRCKV 688
+ ++E+ D PPKV T + EE++ + K+CK+
Sbjct: 332 ECKGGDEEENDEPPKVVVTEVKEEDAFYSKKCKL 365
>BC028125-1|AAH28125.1| 440|Homo sapiens nucleoporin 50kDa protein.
Length = 440
Score = 87.4 bits (207), Expect = 4e-17
Identities = 63/214 (29%), Positives = 96/214 (44%)
Frame = +2
Query: 47 LNESLSDWIKKHVDETPLCILTPIFRDYEAYLKEIQEEYHGPDGDCSEIETKKNVNSETK 226
LN S+ DWI KHV+ PLC LTPIF+DYE YL I E+ HG G SE E+ K V +ET+
Sbjct: 135 LNCSVRDWIVKHVNTNPLCDLTPIFKDYEKYLANI-EQQHGNSGRNSESESNK-VAAETQ 192
Query: 227 NPVEKSKNGIFSESSRDLTVSGSSIFKLDPSKPFSTTPLSSSCNMLGDKPKGFSFGINTA 406
+P + ES+ G+ K + + + LG F+FG
Sbjct: 193 SPSLFGSTKLQQEST--FLFHGNKTEDTPDKKMEVASEKKTDPSSLGATSASFNFGKKVD 250
Query: 407 TSTINSIPAIXXXXXXXXXXXXXXXXXXXXXFSFGLKSSPSSDGSPLKFGAPSLTSTNTN 586
+S + S+ ++ +S P S P K ++
Sbjct: 251 SSVLGSLSSVPLTGFSFSPGNSSLFGKDT------TQSKPVSSPFPTK-PLEGQAEGDSG 303
Query: 587 NTEPANQEDEDVPPKVEFTPIAEENSVFDKRCKV 688
+ ++E+ D PPKV T + EE++ + K+CK+
Sbjct: 304 ECKGGDEEENDEPPKVVVTEVKEEDAFYSKKCKL 337
>BC016055-1|AAH16055.1| 440|Homo sapiens NUP50 protein protein.
Length = 440
Score = 87.4 bits (207), Expect = 4e-17
Identities = 63/214 (29%), Positives = 96/214 (44%)
Frame = +2
Query: 47 LNESLSDWIKKHVDETPLCILTPIFRDYEAYLKEIQEEYHGPDGDCSEIETKKNVNSETK 226
LN S+ DWI KHV+ PLC LTPIF+DYE YL I E+ HG G SE E+ K V +ET+
Sbjct: 135 LNCSVRDWIVKHVNTNPLCDLTPIFKDYEKYLANI-EQQHGNSGRNSESESNK-VAAETQ 192
Query: 227 NPVEKSKNGIFSESSRDLTVSGSSIFKLDPSKPFSTTPLSSSCNMLGDKPKGFSFGINTA 406
+P + ES+ G+ K + + + LG F+FG
Sbjct: 193 SPSLFGSTKLQQEST--FLFHGNKTEDTPDKKMEVASEKKTDPSSLGATSASFNFGKKVD 250
Query: 407 TSTINSIPAIXXXXXXXXXXXXXXXXXXXXXFSFGLKSSPSSDGSPLKFGAPSLTSTNTN 586
+S + S+ ++ +S P S P K ++
Sbjct: 251 SSVLGSLSSVPLTGFSFSPGNSSLFGKDT------TQSKPVSSPFPTK-PLEGQAEGDSG 303
Query: 587 NTEPANQEDEDVPPKVEFTPIAEENSVFDKRCKV 688
+ ++E+ D PPKV T + EE++ + K+CK+
Sbjct: 304 ECKGGDEEENDEPPKVVVTEVKEEDAFYSKKCKL 337
>AL008718-1|CAI17944.1| 468|Homo sapiens nucleoporin 50kDa protein.
Length = 468
Score = 87.4 bits (207), Expect = 4e-17
Identities = 63/214 (29%), Positives = 96/214 (44%)
Frame = +2
Query: 47 LNESLSDWIKKHVDETPLCILTPIFRDYEAYLKEIQEEYHGPDGDCSEIETKKNVNSETK 226
LN S+ DWI KHV+ PLC LTPIF+DYE YL I E+ HG G SE E+ K V +ET+
Sbjct: 163 LNCSVRDWIVKHVNTNPLCDLTPIFKDYEKYLANI-EQQHGNSGRNSESESNK-VAAETQ 220
Query: 227 NPVEKSKNGIFSESSRDLTVSGSSIFKLDPSKPFSTTPLSSSCNMLGDKPKGFSFGINTA 406
+P + ES+ G+ K + + + LG F+FG
Sbjct: 221 SPSLFGSTKLQQEST--FLFHGNKTEDTPDKKMEVASEKKTDPSSLGATSASFNFGKKVD 278
Query: 407 TSTINSIPAIXXXXXXXXXXXXXXXXXXXXXFSFGLKSSPSSDGSPLKFGAPSLTSTNTN 586
+S + S+ ++ +S P S P K ++
Sbjct: 279 SSVLGSLSSVPLTGFSFSPGNSSLFGKDT------TQSKPVSSPFPTK-PLEGQAEGDSG 331
Query: 587 NTEPANQEDEDVPPKVEFTPIAEENSVFDKRCKV 688
+ ++E+ D PPKV T + EE++ + K+CK+
Sbjct: 332 ECKGGDEEENDEPPKVVVTEVKEEDAFYSKKCKL 365
>U20979-1|AAA76736.1| 938|Homo sapiens chromatin assembly factor-I
p150 subunit protein.
Length = 938
Score = 31.1 bits (67), Expect = 3.9
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = +2
Query: 554 GAPSLTSTNTNNTEPANQEDEDVPPKVEFTPIAEENSVFDKR 679
G+P ST +T P ED +P K + ENSV++KR
Sbjct: 753 GSPRTPSTTYLHT-PTPSEDAAIPSKSRLKRLISENSVYEKR 793
>BC067093-1|AAH67093.1| 956|Homo sapiens chromatin assembly factor
1, subunit A (p150) protein.
Length = 956
Score = 30.7 bits (66), Expect = 5.1
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = +2
Query: 554 GAPSLTSTNTNNTEPANQEDEDVPPKVEFTPIAEENSVFDKR 679
G+P ST +T P ED +P K + ENSV++KR
Sbjct: 771 GSPRSPSTTYLHT-PTPSEDAAIPSKSRLKRLISENSVYEKR 811
>AF190465-2|AAF04291.1| 938|Homo sapiens chromatin assembly
factor-I p150 subunit protein.
Length = 938
Score = 30.7 bits (66), Expect = 5.1
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = +2
Query: 554 GAPSLTSTNTNNTEPANQEDEDVPPKVEFTPIAEENSVFDKR 679
G+P ST +T P ED +P K + ENSV++KR
Sbjct: 753 GSPRSPSTTYLHT-PTPSEDAAIPSKSRLKRLISENSVYEKR 793
>BC088365-1|AAH88365.2| 435|Homo sapiens PTD016 protein protein.
Length = 435
Score = 30.3 bits (65), Expect = 6.8
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -2
Query: 392 QKKILLVCLQAYCKNCLMVW 333
QK ILL+C +C+ C+ +W
Sbjct: 383 QKPILLICQHIFCEECMTLW 402
>AK098649-1|BAC05364.1| 252|Homo sapiens protein ( Homo sapiens
cDNA FLJ25783 fis, clone TST06726. ).
Length = 252
Score = 30.3 bits (65), Expect = 6.8
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -2
Query: 392 QKKILLVCLQAYCKNCLMVW 333
QK ILL+C +C+ C+ +W
Sbjct: 200 QKPILLICQHIFCEECMTLW 219
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,256,316
Number of Sequences: 237096
Number of extensions: 1612244
Number of successful extensions: 4839
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4838
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7895240574
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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