Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30235
(517 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.32
SB_49656| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.32
SB_29012| Best HMM Match : Avirulence (HMM E-Value=1.1) 32 0.32
SB_19791| Best HMM Match : Reprolysin (HMM E-Value=3.1) 29 1.7
SB_59525| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_52067| Best HMM Match : Pkinase_C (HMM E-Value=6.9) 29 3.0
SB_37790| Best HMM Match : HAT (HMM E-Value=0.17) 28 4.0
SB_26469| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_5142| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_5689| Best HMM Match : Ribosomal_L34e (HMM E-Value=0.34) 27 6.9
SB_30084| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
>SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 337
Score = 31.9 bits (69), Expect = 0.32
Identities = 21/60 (35%), Positives = 31/60 (51%)
Frame = -3
Query: 182 QRDGSRARHEPRNVINVFYAAGPQTGVVLDVSPRTAMCVRNVDVQMCPAVHTMTRS*LRS 3
Q G R E R + F QT ++L P++A+CV+ D + A+HT R+ LRS
Sbjct: 156 QSSGMRRLEEERVL---FLETDTQTDMLLG-KPKSAICVQRFDDSLNSAIHTTYRTWLRS 211
>SB_49656| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 292
Score = 31.9 bits (69), Expect = 0.32
Identities = 21/60 (35%), Positives = 31/60 (51%)
Frame = -3
Query: 182 QRDGSRARHEPRNVINVFYAAGPQTGVVLDVSPRTAMCVRNVDVQMCPAVHTMTRS*LRS 3
Q G R E R + F QT ++L P++A+CV+ D + A+HT R+ LRS
Sbjct: 65 QSSGMRRLEEERVL---FLETDTQTDMLLG-KPKSAICVQRFDDSLNSAIHTTYRTWLRS 120
>SB_29012| Best HMM Match : Avirulence (HMM E-Value=1.1)
Length = 444
Score = 31.9 bits (69), Expect = 0.32
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +2
Query: 68 RTLRSVETHPGPLLSEGRLHKKH*SHCVARAALVIRRV 181
+T+R V+T P L + RLH H +HC L +R V
Sbjct: 370 QTVRIVQTPPDRLCALYRLHHTHSAHCTDTTRLTVRTV 407
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +2
Query: 68 RTLRSVETHPGPLLSEGRLHKKH*SHCVARAALVIRRV 181
+TLR V+T P L + R H+ H +HC +R V
Sbjct: 210 QTLRIVQTPPDRLCALYRFHQTHCAHCTDFTRQTVRTV 247
>SB_19791| Best HMM Match : Reprolysin (HMM E-Value=3.1)
Length = 616
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +1
Query: 304 MFYCYFKIFIITSNLSGARVMFSVRVASSRVYEFLSSWFR 423
+ +C K+F+I SNL ++ + ++SR S WF+
Sbjct: 147 LVFCLTKVFLIESNLPALDIVKNKIDSASRYLHVFSKWFQ 186
>SB_59525| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 43
Score = 28.7 bits (61), Expect = 3.0
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = -3
Query: 86 PRTAMCVRNVDVQMCPAVHTMTRS*LRS 3
P++A+CV+ D + A+HT R+ LRS
Sbjct: 6 PKSAICVQRFDDSLNSAIHTTYRTWLRS 33
>SB_52067| Best HMM Match : Pkinase_C (HMM E-Value=6.9)
Length = 57
Score = 28.7 bits (61), Expect = 3.0
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = -3
Query: 86 PRTAMCVRNVDVQMCPAVHTMTRS*LRS 3
P++A+CV+ D + A+HT R+ LRS
Sbjct: 6 PKSAICVQRFDDSLNSAIHTTYRTWLRS 33
>SB_37790| Best HMM Match : HAT (HMM E-Value=0.17)
Length = 498
Score = 28.3 bits (60), Expect = 4.0
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 48 LNIDISNAHCGPWRHIQDHSCLRAGCIKN 134
L +D+ NA GPW I+ H C + C+ N
Sbjct: 287 LKLDMGNA--GPWGDIKIHPCDKPKCLTN 313
>SB_26469| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 27.9 bits (59), Expect = 5.3
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = -3
Query: 182 QRDGSRARHEPRNVINVFYAAGPQTGVVLDVSPRTAMCVRNVDVQMCPAVHTMTR 18
Q G R E R + F QT ++L P++A+CV+ D + A+HT R
Sbjct: 24 QSSGMRRLEEERVL---FLETDTQTDMLLG-KPKSAICVQRFDDSLNSAIHTTYR 74
>SB_5142| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 65
Score = 27.9 bits (59), Expect = 5.3
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +3
Query: 81 PWRHIQDHSCLRAGCIKNI 137
PWR+ DH CL+ I N+
Sbjct: 5 PWRNAADHHCLKTAIIFNV 23
>SB_5689| Best HMM Match : Ribosomal_L34e (HMM E-Value=0.34)
Length = 524
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 68 RTLRSVETHPGPLLSEGRLHKKH*SHCVARAALVIRRV 181
+T+R+V+T P L + R H+ +HC +R V
Sbjct: 365 QTVRTVQTSPDRLCALYRFHQTDCAHCTVTTRQTVRSV 402
>SB_30084| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 135
Score = 27.1 bits (57), Expect = 9.2
Identities = 13/45 (28%), Positives = 20/45 (44%)
Frame = +3
Query: 246 PKTTITNRVSLARLSDGSKNVLLLFQNFHNHVEPLWRARYV*RAR 380
P + + N L DG ++ + N VEPLW +V A+
Sbjct: 17 PNSPVQNGTLKQSLEDGKDHMSTCYDWSRNEVEPLWLYEHVEAAK 61
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,959,758
Number of Sequences: 59808
Number of extensions: 256657
Number of successful extensions: 726
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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