Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30235
         (517 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g26190.1 68418.m03116 DC1 domain-containing protein contains ...    27   9.9  
At3g55880.2 68416.m06210 expressed protein                             27   9.9  
At3g55880.1 68416.m06209 expressed protein                             27   9.9  
At2g21850.1 68415.m02596 DC1 domain-containing protein contains ...    27   9.9  

>At5g26190.1 68418.m03116 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 556

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -2

Query: 135 CFLCSRPSDRSGPGCVSTDRNVRSKCRCSNVSCSSHYDAQLTAFF 1
           C  C RPS+    G      NV+   RC+ +S   ++D+ L + F
Sbjct: 350 CVACQRPSN----GFRYESGNVKLDVRCATISDEFNHDSHLHSLF 390


>At3g55880.2 68416.m06210 expressed protein
          Length = 215

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 11/22 (50%), Positives = 18/22 (81%), Gaps = 1/22 (4%)
 Frame = +1

Query: 394 VYEFLSSW-FRYSVVDVVLIVI 456
           +Y +LS++ FRYS++D+ LI I
Sbjct: 76  IYSYLSNYDFRYSLIDIPLISI 97


>At3g55880.1 68416.m06209 expressed protein
          Length = 198

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 11/22 (50%), Positives = 18/22 (81%), Gaps = 1/22 (4%)
 Frame = +1

Query: 394 VYEFLSSW-FRYSVVDVVLIVI 456
           +Y +LS++ FRYS++D+ LI I
Sbjct: 76  IYSYLSNYDFRYSLIDIPLISI 97


>At2g21850.1 68415.m02596 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 772

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -2

Query: 135 CFLCSRPSDRSGPGCVSTDRNVRSKC 58
           C +C++P   S  GC+  D N  ++C
Sbjct: 598 CRVCAKPCGVSFYGCIGCDFNAHAEC 623


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,266,571
Number of Sequences: 28952
Number of extensions: 163004
Number of successful extensions: 400
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 400
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)