Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30234
(555 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC365.06 |pmt3|ubl2, smt3|SUMO|Schizosaccharomyces pombe|chr 2... 91 8e-20
SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyce... 32 0.049
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 27 2.5
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch... 26 3.2
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr... 26 3.2
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ... 26 3.2
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 25 5.7
SPAC2G11.13 |atg22||autophagy associated protein Atg22 |Schizosa... 25 7.5
SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual 25 9.9
SPBC18H10.09 |||zinc finger protein, zf-CHY type|Schizosaccharom... 25 9.9
>SPBC365.06 |pmt3|ubl2, smt3|SUMO|Schizosaccharomyces pombe|chr
2|||Manual
Length = 117
Score = 91.5 bits (217), Expect = 8e-20
Identities = 45/82 (54%), Positives = 52/82 (63%)
Frame = +1
Query: 100 KGENEHINLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQVVRFRFDGQPINEND 279
K EHINLKV+GQDN V FKIKK T KLM YC R G SM +RF DG+ I +
Sbjct: 30 KPSTEHINLKVVGQDNNEVFFKIKKTTEFSKLMKIYCARQGKSMNSLRFLVDGERIRPDQ 89
Query: 280 TPTSLEMEEGDTIEVYQQQTGG 345
TP L+ME+GD IE +Q GG
Sbjct: 90 TPAELDMEDGDQIEAVLEQLGG 111
>SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 406
Score = 32.3 bits (70), Expect = 0.049
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +1
Query: 184 LRKLMNAYCDRAGLSM-QVVRFRFDGQPINENDTPTSLEMEEGDTIEV 324
++ L+ YC +S + +R F+G+ ++ ND S E+E+ D + V
Sbjct: 356 VKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSV 403
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 26.6 bits (56), Expect = 2.5
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -3
Query: 406 LILTHWRWSILKIIKFTLGTLLR 338
L+ H RWS +++ K+ LGT +
Sbjct: 1285 LLFCHGRWSYVRLSKYILGTFYK 1307
>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
cytochrome c oxidase assembly protein Cox1101,
mitochondrial ribosomal protein
Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 753
Score = 26.2 bits (55), Expect = 3.2
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -1
Query: 198 HQFPERCVFLYFELYNCI 145
H+FP C+F F YNCI
Sbjct: 533 HRFP--CIFTSFSCYNCI 548
>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1516
Score = 26.2 bits (55), Expect = 3.2
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -1
Query: 165 FELYNCIILT*YFQINVFVFSLLFI 91
+E+YN +I + Y INV F+ LFI
Sbjct: 1307 YEIYNALIRSIYRFINVEAFNSLFI 1331
>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
cytochrome c oxidase assembly protein Cox1102,
mitochondrial ribosomal protein
Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
Length = 753
Score = 26.2 bits (55), Expect = 3.2
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -1
Query: 198 HQFPERCVFLYFELYNCI 145
H+FP C+F F YNCI
Sbjct: 533 HRFP--CIFTSFSCYNCI 548
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 25.4 bits (53), Expect = 5.7
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Frame = +1
Query: 73 INLKM---ADEKKGENEHINLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDR 216
IN+K A + K ++ HI + G+ NA+V+ KI K ++ + CD+
Sbjct: 158 INIKQDMEAFKDKSKSPHIVVATPGRLNALVREKILKVNSVKHFVLDECDK 208
>SPAC2G11.13 |atg22||autophagy associated protein Atg22
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 529
Score = 25.0 bits (52), Expect = 7.5
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +2
Query: 35 SIHSFVLIVSRTTLISKWLMKRREKTNTL 121
+++ FV++V L S W+M + KT L
Sbjct: 496 AVYIFVIVVMTLPLSSLWIMYQHSKTPNL 524
>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 24.6 bits (51), Expect = 9.9
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +2
Query: 44 SFVLIVSRTTLISKWLMKRREKTNTLI*KY*VKIMQLY 157
+F+ + +LIS +L+K EK+N L K+ V I LY
Sbjct: 341 TFIFQENVVSLISGFLLKEYEKSNFLDSKFYVLIDFLY 378
>SPBC18H10.09 |||zinc finger protein, zf-CHY
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 24.6 bits (51), Expect = 9.9
Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Frame = -2
Query: 548 KLFETHNALRSSAMLLCVTKLLPNTFTDTNDVSLKLT*G*SLRRVHL---IDFDPLEMVN 378
K FET N M+ V P T TD ++ KL G RVHL +D++ L N
Sbjct: 32 KSFETCNTKERELMVQQVDSKKPETPTDLEPLANKLE-GPLSERVHLNTTLDYEVLRGQN 90
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,108,193
Number of Sequences: 5004
Number of extensions: 39585
Number of successful extensions: 86
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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