Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30234
(555 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1811 - 40055106-40055174,40055291-40055440,40056696-40056782 94 6e-20
01_06_1812 - 40057904-40057972,40058071-40058220,40059449-40059532 93 1e-19
07_03_0989 + 23161020-23161412 52 3e-07
07_03_0990 + 23173868-23174200 51 7e-07
01_06_1364 + 36684937-36685281 50 2e-06
01_05_0651 + 23930455-23930457,23930543-23930636,23930764-239308... 49 2e-06
07_03_0988 + 23160028-23160360 44 1e-04
01_04_0034 + 15318509-15319567 33 0.12
12_01_1080 + 11241590-11241625,11241723-11242018,11242113-112422... 27 7.6
03_05_1062 - 30043596-30043811,30044083-30044178,30044387-300444... 27 7.6
>01_06_1811 - 40055106-40055174,40055291-40055440,40056696-40056782
Length = 101
Score = 94.3 bits (224), Expect = 6e-20
Identities = 47/90 (52%), Positives = 58/90 (64%), Gaps = 5/90 (5%)
Frame = +1
Query: 91 DEKK-----GENEHINLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQVVRFRFD 255
DEKK G HINLKV GQD V F+IK+ T L+KLMNAYCDR + ++ + F FD
Sbjct: 8 DEKKPAGGEGGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDIKSIAFLFD 67
Query: 256 GQPINENDTPTSLEMEEGDTIEVYQQQTGG 345
G+ +N TP LEME+GD I+ QTGG
Sbjct: 68 GRRLNAEQTPDQLEMEDGDEIDAMLHQTGG 97
>01_06_1812 - 40057904-40057972,40058071-40058220,40059449-40059532
Length = 100
Score = 93.1 bits (221), Expect = 1e-19
Identities = 43/82 (52%), Positives = 53/82 (64%)
Frame = +1
Query: 100 KGENEHINLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQVVRFRFDGQPINEND 279
+G HINLKV GQD V F+IK+ T L+KLMNAYCDR + M + F FDG+ +
Sbjct: 15 EGGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDMNAIAFLFDGRRLRGEQ 74
Query: 280 TPTSLEMEEGDTIEVYQQQTGG 345
TP LEME+GD I+ QTGG
Sbjct: 75 TPDELEMEDGDEIDAMLHQTGG 96
>07_03_0989 + 23161020-23161412
Length = 130
Score = 52.0 bits (119), Expect = 3e-07
Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Frame = +1
Query: 112 EHINLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQ--VVRFRFDGQPINENDTP 285
E++ LKV G D V + + L+ LM+ Y DR+ +Q RF FDG+ + TP
Sbjct: 37 EYVTLKVQGTDGRAVYRTMLRTEELQGLMDFYYDRSHGRVQRGTGRFLFDGRRLRGWQTP 96
Query: 286 TSLEMEEGDTIEVYQQQTGGVS 351
L+ME+GD + +++ GG +
Sbjct: 97 AELQMEDGDEVNFFEELIGGAA 118
>07_03_0990 + 23173868-23174200
Length = 110
Score = 50.8 bits (116), Expect = 7e-07
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Frame = +1
Query: 100 KGENEHINLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQ--VVRFRFDGQPINE 273
K E++ LKV D V ++ L+ LM+ Y DRA +Q RF +DG+ ++
Sbjct: 25 KRAGEYVTLKVQDTDGRAVYRTMRWTEQLQGLMDFYYDRAHGRVQRGTGRFLYDGRRLSG 84
Query: 274 NDTPTSLEMEEGDTIEVYQQQTGGVS 351
TP L+ME+GD ++ +++ GG +
Sbjct: 85 WQTPAELDMEDGDEVDFFEELIGGAA 110
>01_06_1364 + 36684937-36685281
Length = 114
Score = 49.6 bits (113), Expect = 2e-06
Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Frame = +1
Query: 76 NLKMADEKKGENEH-INLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQVVRF-R 249
+LK+ + G I + V Q A V F IK LR++M+ YC + L + V+F
Sbjct: 17 DLKLVKAEPGTGPGLITITVTSQTFADVYFAIKPRVKLRRVMDLYCGKHSLDPKTVKFID 76
Query: 250 FDGQPINENDTPTSLEMEEGDTIEVYQQQTGGVSL 354
DG+ + TP + +++G TI + Q GG +
Sbjct: 77 DDGRFVRSEQTPEEVGLQDGSTISLAIDQQGGACI 111
>01_05_0651 +
23930455-23930457,23930543-23930636,23930764-23930849,
23930930-23931108,23932275-23932482,23932808-23932975
Length = 245
Score = 49.2 bits (112), Expect = 2e-06
Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Frame = +1
Query: 70 HINLKMADEKKGENEHINLKVLGQDNA-IVQFKIKKHTPLRKLMNAYCDRAGLSMQVVRF 246
HI+L + E+ E + + V QD A QF++ K KL AY + LS+ + F
Sbjct: 157 HIDLDKSPERHEAREKVVVTV--QDKAGHHQFRLYKDEKFGKLFRAYAKKVNLSVADLTF 214
Query: 247 RFDGQPINENDTPTSLEMEEGDTIEV 324
FDG ++ TP L +E+ D +EV
Sbjct: 215 AFDGDKVDAESTPEDLGLEDEDMVEV 240
>07_03_0988 + 23160028-23160360
Length = 110
Score = 43.6 bits (98), Expect = 1e-04
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Frame = +1
Query: 118 INLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDRA-GLSMQVVRFRFDGQPINENDTPTSL 294
I LKV+ Q++ ++ I+ L+ +M+ Y +A ++ F FDG + + TP L
Sbjct: 21 ITLKVMDQEDRRIRHTIRMADKLQVVMDMYYAKAPDVTYGTGTFLFDGIRLKGDMTPMGL 80
Query: 295 EMEEGDTIEVYQQQTGG 345
EM +GDT++ + GG
Sbjct: 81 EMVDGDTVDFFPVMIGG 97
>01_04_0034 + 15318509-15319567
Length = 352
Score = 33.5 bits (73), Expect = 0.12
Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Frame = +1
Query: 118 INLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSM--QVVRFRFDGQPINENDTPTS 291
+ + +L A + +++ L+ LM+ R SM ++G+ + ++ TP
Sbjct: 276 VTIDLLTMVKAKRTYTLRRTDKLQGLMDLCLSREPASMYRHGCVLIYEGRRVQDSQTPDD 335
Query: 292 LEMEEGDTIEVYQQQTG 342
L++E+GDTI +Q G
Sbjct: 336 LKLEDGDTIHAIARQVG 352
>12_01_1080 + 11241590-11241625,11241723-11242018,11242113-11242269,
11242381-11242449,11242551-11243480,11243868-11243906,
11244414-11244478,11244663-11244768,11244850-11245050,
11247001-11247201,11247756-11247779,11249425-11249586,
11249676-11249915,11250267-11250479,11250618-11250968,
11251041-11251193,11251649-11251858,11252049-11252267,
11252365-11252482,11252879-11253828,11254023-11254220,
11254294-11254553,11255316-11255505,11255817-11256169,
11258278-11258386,11258466-11258615,11258748-11258844,
11259315-11259415
Length = 2065
Score = 27.5 bits (58), Expect = 7.6
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
Frame = +1
Query: 166 IKKHTPLRKLMN----AYCDRAGLSMQVVRFRFDGQPINENDTPTSLEMEEGDTIEVYQQ 333
IK+H L KL+N + C RA L + R+ G + + L MEE + E +
Sbjct: 1742 IKEHRTLAKLLNGTLGSICSRAQLCSKSQRYIIQGNWLQTSTATGRLSMEEPNLQENWLL 1801
Query: 334 QTGGVSLV 357
T S +
Sbjct: 1802 VTADYSQI 1809
>03_05_1062 -
30043596-30043811,30044083-30044178,30044387-30044448,
30044990-30045023,30045220-30046173
Length = 453
Score = 27.5 bits (58), Expect = 7.6
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -2
Query: 539 ETHNALRSSAMLLCVTKLLPNTFTDTNDV 453
E H +L+ +AML+C K + TD DV
Sbjct: 414 ELHKSLQEAAMLVCEQKQANSPATDNGDV 442
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,716,552
Number of Sequences: 37544
Number of extensions: 225871
Number of successful extensions: 408
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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