Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30233
         (627 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    29   0.73 
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ...    28   1.3  
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa...    27   2.9  
SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomy...    25   6.8  
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    25   6.8  
SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces pomb...    25   6.8  
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch...    25   9.0  

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 28.7 bits (61), Expect = 0.73
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +1

Query: 85  KPPPRPAVSAPEYNRAARDPAFFGPPCMMGPRLT 186
           K PP P   AP  N ++R P+ F PP    P +T
Sbjct: 200 KVPPPPLSQAPVANTSSR-PSSFAPPAGHAPNVT 232


>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
           Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 296

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
 Frame = +1

Query: 16  PPWQQWRPARSNSGLRVRYWSRQKPP---PRPAVSAPEYNRAARDPAFFGPP 162
           PP Q + PA S+S   ++Y     PP   P P V A  Y +A + P     P
Sbjct: 210 PPQQNYPPAASSSAPPMQYQQTAYPPQQAPYPPVQA--YPQAPQQPIVVAQP 259


>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
           Msa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +3

Query: 3   PPLLPSLAAVEACSKQLRTEGSILEPPKAATSPSCL 110
           P +LPS+ ++E+   +L T+GS  E P    +PS +
Sbjct: 320 PSILPSIPSLESGKAELPTDGS-FEQPGYPMNPSMM 354


>SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 589

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = +2

Query: 407 VDESVVLRA*TVRVESLERGRELQHVHAQSFLHR 508
           +++S +  A   R+  LE  + +QH+HA++ +HR
Sbjct: 401 IEKSKLTEAQIARI-CLETCKGIQHLHARNIIHR 433


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 182 NRGPIMQGGPKKAGSLAARLYSGAE 108
           + G  + GG K+  SLA  LYS AE
Sbjct: 702 SNGSSLSGGQKQRVSLARALYSNAE 726


>SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 910

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -3

Query: 430 AQNDRLIDIPDMITVLTTL 374
           AQND  +D+PD   ++TTL
Sbjct: 647 AQNDPTVDVPDRDFLVTTL 665


>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 979

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 558 SAKEFISSIIFGWSQCVVSNS 620
           S KEF+  ++  WS C + NS
Sbjct: 360 SKKEFVHDLMLIWSNCFLYNS 380


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,408,922
Number of Sequences: 5004
Number of extensions: 48167
Number of successful extensions: 161
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)