Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30233
         (627 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24437| Best HMM Match : No HMM Matches (HMM E-Value=.)             146   2e-35
SB_109| Best HMM Match : Spectrin (HMM E-Value=0.002)                  82   3e-16
SB_24030| Best HMM Match : No HMM Matches (HMM E-Value=.)              58   8e-09
SB_11119| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.44 
SB_11953| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.77 
SB_53403| Best HMM Match : efhand (HMM E-Value=2.8e-12)                30   1.8  
SB_38971| Best HMM Match : SRCR (HMM E-Value=0)                        29   2.3  
SB_38753| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_59003| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_59381| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.1  
SB_45906| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)              27   9.4  
SB_10985| Best HMM Match : E-MAP-115 (HMM E-Value=5.5)                 27   9.4  

>SB_24437| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 238

 Score =  146 bits (353), Expect = 2e-35
 Identities = 60/175 (34%), Positives = 112/175 (64%), Gaps = 1/175 (0%)
 Frame = -3

Query: 562 ADLNEVRFSAYRTALKLRTVQKALCMHMLQLPAALEAFDSHGLR-AQNDRLIDIPDMITV 386
           ++LN ++++AYRTA+KLR + K   ++++++P      D   +     ++ + IP+   +
Sbjct: 6   SELNNIKYAAYRTAMKLRAIHKKTQLYLVEIPILTATLDEEDVPDGYTEKALSIPEASKI 65

Query: 385 LTTLYEVIAAENPSAVNVPLCLDLSMNWLLNVYDSQRTGQIRVLSFKVGLVLLCKGHLEE 206
           +T L+     +    +++P+  DL++N +LN+YD  RTG I+ LS K+G+ LLC   L++
Sbjct: 66  ITALFINQNGDRQDFIDIPMASDLTLNLMLNIYDPGRTGYIQALSLKIGISLLCAAKLQD 125

Query: 205 KYRYLFRLIADPSCRADQRKLGLLLHDCIQVPRQLGEVAAFGGSNIEPSVRSCFE 41
           KYRYLFR + +     D+++L L L +C+Q+P+ + E   F G+++EP+V++CFE
Sbjct: 126 KYRYLFRQMCNSRAVLDRKRLTLFLQECLQIPKYIYESTIFSGTSVEPAVKNCFE 180


>SB_109| Best HMM Match : Spectrin (HMM E-Value=0.002)
          Length = 365

 Score = 82.2 bits (194), Expect = 3e-16
 Identities = 42/98 (42%), Positives = 65/98 (66%), Gaps = 1/98 (1%)
 Frame = -3

Query: 562 ADLNEVRFSAYRTALKLRTVQKALCMHMLQLPAALEAFDSHGL-RAQNDRLIDIPDMITV 386
           A+LN++++SAYRTA+KLR +QKA  + ++ L     AF  H L +A+ND LI + +M+  
Sbjct: 269 AELNDIKYSAYRTAMKLRCIQKATKLDLVTLNNLSSAFVQHNLSKARNDALIGVAEMVDT 328

Query: 385 LTTLYEVIAAENPSAVNVPLCLDLSMNWLLNVYDSQRT 272
           L T+++ I     + VN  + +DL++NWLLNVYD   T
Sbjct: 329 LHTVFDNIEVGFDN-VNPAINIDLTLNWLLNVYDRSVT 365


>SB_24030| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 217

 Score = 57.6 bits (133), Expect = 8e-09
 Identities = 35/115 (30%), Positives = 64/115 (55%), Gaps = 6/115 (5%)
 Frame = -3

Query: 580 ELMNSLADLN--EVRFSAYRTALKLRTVQKALCMHMLQLPAALEAFDSHGLRA--QNDRL 413
           +L+N + D N   +RF++YRTA KL+ +QK   +H++ +   +EAF  +GL     N  L
Sbjct: 89  DLINDMNDQNFDTIRFASYRTAAKLQFIQKKTNLHLVDVYNMIEAFRENGLNTLDHNTEL 148

Query: 412 IDIPDMITVLTTLYEVIAAENPSAVNVPL--CLDLSMNWLLNVYDSQRTGQIRVL 254
            ++  +  ++++++  +    P+  NV +   + L  NWLL  YD   +G+ R L
Sbjct: 149 HEL-RLEAIVSSIFYALNKRLPTTHNVDVERSISLVTNWLLYAYDRTASGEGRYL 202


>SB_11119| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 123

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 3/91 (3%)
 Frame = -3

Query: 589 KMIELMNSLAD---LNEVRFSAYRTALKLRTVQKALCMHMLQLPAALEAFDSHGLRAQND 419
           ++ ++  SL+D   LN+V+ S+         V + L M M     +L    S G+   +D
Sbjct: 33  ELTDIKTSLSDDEALNDVKLSSKPDDYVSDKVLRYLLMRM-----SLRGAHS-GMALNHD 86

Query: 418 RLIDIPDMITVLTTLYEVIAAENPSAVNVPL 326
             ID P+ + VLT  + V  +E+   V +P+
Sbjct: 87  SSIDSPEYVLVLTRTFRVFESESSLTVGIPI 117


>SB_11953| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 214

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = -3

Query: 307 NWLLNVYDSQRTGQIRVLSFKVGLVLLCKGHLEEKYRYLFRL 182
           +++ NV+D  + G I    F   L +  +G ++EK ++ F+L
Sbjct: 57  SFVFNVFDENKDGHIEFREFICALSVTSRGSIDEKLQWAFKL 98


>SB_53403| Best HMM Match : efhand (HMM E-Value=2.8e-12)
          Length = 146

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -3

Query: 301 LLNVYDSQRTGQIRVLSFKVGLVLLCKGHLEEKYRYLFRL 182
           +   +D  R+G+I    F   L +  +G+L+EK  + FR+
Sbjct: 67  VFRTFDDDRSGRIDFKEFMSSLSVTSRGNLDEKLEWAFRI 106


>SB_38971| Best HMM Match : SRCR (HMM E-Value=0)
          Length = 2436

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +1

Query: 268  VRCAGCRTRSAASSWRGPG--TAARSRRLDSPPQSLR 372
            VRC G     A+  +RG G  TAA ++   SPPQ++R
Sbjct: 1252 VRCTGTEKDLASCRFRGWGNITAATAKMRGSPPQNVR 1288


>SB_38753| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 797

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 1   FLLYCPPWQQWRPARSNSGLRVRYWSRQ 84
           F L+CP W+QWR  R +   +V  W  Q
Sbjct: 420 FFLFCPCWKQWR--RQDHIPQVAMWKSQ 445


>SB_59003| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 605

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 21/62 (33%), Positives = 28/62 (45%)
 Frame = -2

Query: 287 RQPAHRTDQGVELQGRLGVAL*RTPRGKV*VFIPVNRGPIMQGGPKKAGSLAARLYSGAE 108
           R  + RT +  +   R G +  RTPR    V      G + QG P K+GS A R  S   
Sbjct: 448 RSSSQRTPRSAQRTPRSGSSAQRTPRSGSSVQRTPRSGSLAQGTP-KSGSSAQRTPSSGS 506

Query: 107 TA 102
           +A
Sbjct: 507 SA 508


>SB_59381| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 142

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
 Frame = +3

Query: 138 RPSFLWSALHDGSAINRNKYLYFSSR-CPLQSNTKPTLKLNTLICPVR-WLSYTF 296
           RP   W   H GS  N N   Y   R  P+++ T+        + P+  WL+ TF
Sbjct: 7   RPETAWEPKHSGSLENNNMPHYLRLRPNPIKAQTQHHCLCIPAVKPIEDWLNLTF 61


>SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 618

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 44  EATPD*GFDIGAAKSRHLAQLSRHLNTIVQQETQL 148
           EA  D   +      RHL QL+RH++ +VQ+ + +
Sbjct: 580 EAGVDSSLNATGRTKRHLKQLNRHVSAVVQRRSNV 614


>SB_45906| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 685

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = -2

Query: 539 LGLQDRPQATDGAESSV 489
           +G Q+RPQATDG  S+V
Sbjct: 466 IGSQERPQATDGTGSAV 482


>SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
          Length = 829

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/43 (25%), Positives = 18/43 (41%)
 Frame = +2

Query: 266 LSGALAVVHVQQPVHGEVQAQRHVHGAWILRRNHFVQSGEDGD 394
           + GA  +  + +P+         +HG W  +  H    G DGD
Sbjct: 195 IKGAYDIADIAEPLDWINLMTYDLHGTWEYKTGHHTAMGPDGD 237


>SB_10985| Best HMM Match : E-MAP-115 (HMM E-Value=5.5)
          Length = 320

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = -3

Query: 217 HLEEKYRYLFR-LIADPSCRADQRKLGLLLHDCIQVPRQLGEVAAFGGS 74
           HL +K    FR +I  P     Q  +GL +H CI+    +  +  FG S
Sbjct: 94  HLPKKLHCFFRWVIRTPKEMPQQLGIGLAIHQCIRSKSIVNMLHGFGMS 142


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,506,021
Number of Sequences: 59808
Number of extensions: 419387
Number of successful extensions: 1363
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1360
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)