Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30233
         (627 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   3.2  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    22   5.6  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   7.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   7.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   7.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   7.4  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +2

Query: 107 SRHLNTIVQQETQLSLV 157
           SRHL T+ +QET ++LV
Sbjct: 752 SRHLVTLDKQETGVTLV 768


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 180 INRNKYLYFSSRCPLQSNT 236
           +NRN+  Y +S+C L + T
Sbjct: 154 MNRNRPAYLASKCALTTLT 172


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +1

Query: 73   WSRQKPPPRP 102
            W +Q+PPP P
Sbjct: 1350 WRQQQPPPPP 1359


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -3

Query: 592  PKMIELMNSLADLNEVRFSAYRTALKLRTVQKALCMHML 476
            P++ EL+ + + + +      R    LRT QKA+ + ML
Sbjct: 1295 PRLKELVGATSIIKDCVEDMKRGNKILRTCQKAVVLSML 1333


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 268  VRCAGCRTRSAASSWRGP 321
            VRCA   ++S   SW+ P
Sbjct: 1118 VRCAALTSQSLQVSWQPP 1135


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 268  VRCAGCRTRSAASSWRGP 321
            VRCA   ++S   SW+ P
Sbjct: 1114 VRCAALTSQSLQVSWQPP 1131


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,708
Number of Sequences: 438
Number of extensions: 3600
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)