Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30233
         (627 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g11250.1 68418.m01314 disease resistance protein (TIR-NBS-LRR...    29   3.3  
At4g25900.1 68417.m03724 aldose 1-epimerase family protein simil...    28   5.8  
At4g24010.1 68417.m03450 cellulose synthase family protein simil...    28   5.8  
At4g28270.1 68417.m04049 zinc finger (C3HC4-type RING finger) fa...    27   7.7  
At3g01740.1 68416.m00111 expressed protein                             27   7.7  

>At5g11250.1 68418.m01314 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1189

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 26/113 (23%), Positives = 52/113 (46%), Gaps = 2/113 (1%)
 Frame = -3

Query: 538  SAYRTALKLRTVQKALCMHMLQLPAAL-EAFDSHGLRAQN-DRLIDIPDMITVLTTLYEV 365
            S+   A+ L+ +    C  +L+LP+++  A +   +   N   L+++P  I  L  L E+
Sbjct: 836  SSIGNAINLQNLLLDDCSSLLELPSSIGNATNLVYMNLSNCSNLVELPLSIGNLQKLQEL 895

Query: 364  IAAENPSAVNVPLCLDLSMNWLLNVYDSQRTGQIRVLSFKVGLVLLCKGHLEE 206
            I        ++P+ ++L    +L + D     +   +S  V  + LC   +EE
Sbjct: 896  ILKGCSKLEDLPININLESLDILVLNDCSMLKRFPEISTNVRALYLCGTAIEE 948


>At4g25900.1 68417.m03724 aldose 1-epimerase family protein similar
           to apospory-associated protein C; APOC [Chlamydomonas
           reinhardtii] GI:6970044 Pfam profile PF01263: Aldose
           1-epimerase
          Length = 318

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +1

Query: 16  PPWQQWRPARSNSGLRVRYWSRQ-KPPPRPAVSAPEYNRAAR 138
           P +    P  S+  +R R+W  + KPPP P++S    +   R
Sbjct: 97  PQYSNTGPLPSHGFVRQRFWEVETKPPPLPSLSTAHVDLIVR 138


>At4g24010.1 68417.m03450 cellulose synthase family protein similar
           to Zea mays cellulose synthase-5 [gi:9622882], -4
           [gi:9622880]
          Length = 770

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +3

Query: 183 NRNKYLYFSSRCPLQSNTKPTLKLNTLICPVRWLSYTFSSQFMERSRHSG 332
           +R+  +YFSS    +S+    LK N L C V  + Y      +E    SG
Sbjct: 173 DRSPEVYFSSESHSRSDEAENLKTNILKCEVEQMMYEDMKSRVEHVVESG 222


>At4g28270.1 68417.m04049 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 193

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
 Frame = +1

Query: 7   LYCPPW-QQWRPARSNSGLRVRYWSRQKPPPRPAVSAPEYNRAARDPAFFGPPCMMGPRL 183
           L+C P   +W  A +NS  RV  +  ++ PP+  V   + + A   P  +G      P+ 
Sbjct: 39  LFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVP-IYGRG-QKAPQ- 95

Query: 184 TGINTYTFPRGVLY 225
           +G N  + P G +Y
Sbjct: 96  SGSNVPSRPTGPVY 109


>At3g01740.1 68416.m00111 expressed protein
          Length = 126

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -3

Query: 103 LGEVAAFGGSNIEPSVRSCFEQASTAAKEGSKGG 2
           +  +    GS+ +  VR  F  A++ AK+G KGG
Sbjct: 1   MNRIGLIRGSSSKDVVRRTFAAAASKAKKGGKGG 34


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,427,480
Number of Sequences: 28952
Number of extensions: 287895
Number of successful extensions: 1073
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 970
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1070
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)