Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30230
         (591 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13925| Best HMM Match : No HMM Matches (HMM E-Value=.)              59   2e-09
SB_24591| Best HMM Match : No HMM Matches (HMM E-Value=.)              51   6e-07
SB_24775| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.033
SB_13937| Best HMM Match : zf-CCCH (HMM E-Value=0.0017)                29   2.1  
SB_46939| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_18548| Best HMM Match : Peptidase_A17 (HMM E-Value=1.6e-18)         29   2.8  
SB_40870| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_20424| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_38994| Best HMM Match : Integrin_beta (HMM E-Value=0)               28   5.0  
SB_42643| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_5388| Best HMM Match : PH (HMM E-Value=2.5e-08)                     27   8.7  

>SB_13925| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 317

 Score = 59.3 bits (137), Expect = 2e-09
 Identities = 32/89 (35%), Positives = 50/89 (56%)
 Frame = +1

Query: 253 LYDNDGKRYLDLFGGIVTVSVGHCHPKVNAALKDQLDVLWHTTNLYRHPKIYEYVEQLAA 432
           ++D  GKRY+D       V+ GHCHP++  AL+DQ  +L  T+  + +  + E+ ++   
Sbjct: 1   MWDVTGKRYIDFLAAYSAVNQGHCHPRIVKALQDQAGILSLTSRAFYNDVLGEF-QEFVT 59

Query: 433 KLPGDLNVVYLVNSGSEANELATLLAKAY 519
           KL G  + V  VNSG E  E A  LA+ +
Sbjct: 60  KLCG-YDKVLPVNSGVEGGETACKLARKW 87


>SB_24591| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 343

 Score = 51.2 bits (117), Expect = 6e-07
 Identities = 19/55 (34%), Positives = 33/55 (60%)
 Frame = +1

Query: 97  STAKMPPTDFVPRPYTGPSYQQVEQMKGVYMPPSITNAYKKPVLLTQGHMQWLYD 261
           ST +MPP D+ P PY G S+ + +Q++  Y+ P++   YK P+ +     +W+ D
Sbjct: 31  STLEMPPCDYKPEPYKGMSFDKAKQIRQTYLNPALLAYYKDPIFIWAVITKWIQD 85


>SB_24775| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 108

 Score = 35.5 bits (78), Expect = 0.033
 Identities = 15/37 (40%), Positives = 24/37 (64%)
 Frame = +1

Query: 250 WLYDNDGKRYLDLFGGIVTVSVGHCHPKVNAALKDQL 360
           ++ D D KRY+D  G    + +GH HP+V  A+++QL
Sbjct: 43  YVTDEDDKRYVDYVGSWGPMILGHSHPEVLDAVRNQL 79


>SB_13937| Best HMM Match : zf-CCCH (HMM E-Value=0.0017)
          Length = 1495

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +2

Query: 47  KWLIEEQNYASTSSERTARPKCRRRISCPDRTRDLRTNK 163
           KWL  ++N A  SS  T   K  +  S PD T+    NK
Sbjct: 716 KWLQSQKNQAPNSSSETKDSKWPQAPSIPDNTQTNEPNK 754


>SB_46939| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 325

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 495 GDFAGESVHRKPRHHIAADQLPRLHQQPHGL 587
           GD +G++ HR  RHH    Q  +L  +PHGL
Sbjct: 143 GD-SGKNDHRTSRHHWRNRQHSKLELRPHGL 172


>SB_18548| Best HMM Match : Peptidase_A17 (HMM E-Value=1.6e-18)
          Length = 550

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -3

Query: 469 SLNIPRSNPPGA*RLIVRRTHRFSDVCTGWSYATI 365
           SL+IPR  PPG  R++    H F+D      Y  +
Sbjct: 418 SLHIPRCFPPGFGRMVRTDIHHFADASQDNGYGAV 452


>SB_40870| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 431

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = +1

Query: 250 WLYDNDGKRYLDLFGGIVTVSVGHCHPKVNAALKD 354
           ++ D DG   LD++  I ++ +G+ HP +  A++D
Sbjct: 157 YVVDADGNVMLDVYQQIASIPLGYNHPALLKAMQD 191


>SB_20424| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1711

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +2

Query: 29   QQRNTSKWLIEEQNYASTSSERTARPKCRRRISCPDRTRDLRTNK*NK*KEFTCRLQ 199
            ++      L+EEQ   S S   T R  C    S  +RT D      N+ KE  C+L+
Sbjct: 1355 EEMKNESMLVEEQLNESQSELETTRESCTSMNSDLERTCDELQIAQNELKELRCQLE 1411


>SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6753

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/37 (45%), Positives = 19/37 (51%)
 Frame = +1

Query: 223  VLLTQGHMQWLYDNDGKRYLDLFGGIVTVSVGHCHPK 333
            VLLT G  Q L     KR  D    IV+V VG C+ K
Sbjct: 4068 VLLTDGQSQDLVFTAAKRLRDAGVTIVSVGVGCCYSK 4104


>SB_38994| Best HMM Match : Integrin_beta (HMM E-Value=0)
          Length = 467

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 18/59 (30%), Positives = 30/59 (50%)
 Frame = +1

Query: 292 GGIVTVSVGHCHPKVNAALKDQLDVLWHTTNLYRHPKIYEYVEQLAAKLPGDLNVVYLV 468
           GGIVT + G CH   N+ +  + D L + +    H K+ +   Q    + G++  +YLV
Sbjct: 166 GGIVTPNDGQCHLS-NSGVYTKSDELDYPSIAQLHEKLLQKQIQPIFAVTGNVTDLYLV 223


>SB_42643| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 557

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 19/62 (30%), Positives = 30/62 (48%)
 Frame = +3

Query: 141 HGTFVPTSRTNERSLHAAFNHERL*EAGASHPGAHAVVIRQRRQEIPGSVRWNRHRLRGP 320
           HG + PT  T+   L+A+     +  AG+ HP  HAV     +  +P +  W    LR P
Sbjct: 495 HGMY-PTVPTSSALLNASA--VPVPGAGSPHPHYHAVQGANGQYSVPCNCTWQPQDLRRP 551

Query: 321 LS 326
           ++
Sbjct: 552 VA 553


>SB_5388| Best HMM Match : PH (HMM E-Value=2.5e-08)
          Length = 293

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +1

Query: 112 PPTDFVPRPYTGPSYQQVEQMKGVYMPPSITNAYKKPVLLTQGH 243
           PPT + P+PY    Y Q    +G Y P     AY +P    QG+
Sbjct: 154 PPTSYPPQPYPAQPYPQ----QG-YPPQPPPQAYPQPGYPPQGY 192


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,182,357
Number of Sequences: 59808
Number of extensions: 497929
Number of successful extensions: 1370
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1274
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1370
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1434459094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)