Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30228
         (732 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase s...    31   0.22 
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    30   0.30 
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr...    29   0.90 
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    28   1.2  
SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S...    26   4.8  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    26   4.8  
SPAC23C11.04c |pnk1||DNA kinase/phosphatase Pnk1|Schizosaccharom...    26   4.8  

>SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase
           subunit Dps1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 30.7 bits (66), Expect = 0.22
 Identities = 25/70 (35%), Positives = 38/70 (54%)
 Frame = +1

Query: 1   GDFILAVASMMIARLRSDDVTLVLSQVSQIINNVLMVRKKNKTACDTAADNTSRKIRKVT 180
           G+FILA AS  +ARLR+  VT +L+ V   +     ++ KN        D +S +I++  
Sbjct: 165 GNFILARASTAMARLRNPQVTELLATVIADLVRGEFLQLKN------TMDPSSLEIKQSN 218

Query: 181 L*R*IQKSFL 210
               I+KSFL
Sbjct: 219 FDYYIEKSFL 228


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 30.3 bits (65), Expect = 0.30
 Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = +3

Query: 432  PSETNRGLDPI-DILTRIPPPTMR 500
            P+  NR +DP+ DIL  +PPPT R
Sbjct: 1955 PASNNRKVDPLEDILQAMPPPTTR 1978


>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 553

 Score = 28.7 bits (61), Expect = 0.90
 Identities = 24/96 (25%), Positives = 44/96 (45%)
 Frame = -2

Query: 443 CFRWAMSYLP*RIKKTSNDIHLQATDS*LGMKTFKGEVKTTQCKAISEFTRTREPTI*FV 264
           CF +A+       K T+ND H    D  L     K ++ TT+CK  +++  +R     F 
Sbjct: 81  CFHYALDLFADEYKVTANDKHY---DYRLKSHRIKDKI-TTKCKGTTKYFNSRH----FE 132

Query: 263 MKSS*TNYQS*QPETCQLRNDFCIYL*SVTLRILRL 156
           +K++  N  S       + N+  I+  +  +R ++L
Sbjct: 133 IKNAVENLPSFSSNLTTIGNNLRIFWKNGKIRCIKL 168


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -2

Query: 503 VSHGGRWYSCQNIYRI*SPICFRWAMSYL 417
           ++H  ++ SC NIYR+   +C R A +YL
Sbjct: 860 ITHNSKFNSCCNIYRLGYSMCMR-AQAYL 887


>SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor
           Raf2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +1

Query: 25  SMMIARLRSDDVTLVLSQVSQIINNVLMVRKKNKTACDTAADNTS 159
           S    R+RS    L+L Q+++ I N    RKK+K + +  +DN +
Sbjct: 184 SPFFIRIRSSYEHLIL-QINKNIYNARQERKKSKLSSNNPSDNNT 227


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
 Frame = -1

Query: 357  WYENIQRRSKNYTMQSNL*IY-ENKR---THHLICYEIKLNQLSKLATRDMST*K*FLYL 190
            WY+ + R  +    + NL IY E+K+   T H +  ++ LN ++ L   + S+   FL+L
Sbjct: 1853 WYDGL-RNIRFGIQRPNLLIYDEDKKFINTEHFLGSKVNLNSVTSLGNFNGSSPNSFLFL 1911

Query: 189  SLKRNL 172
               R +
Sbjct: 1912 LKNRTM 1917


>SPAC23C11.04c |pnk1||DNA kinase/phosphatase
           Pnk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -1

Query: 498 SWWAVVFVSKYL*DLIPDLFQMGHELLTLKNKKNIKRHTSSGHGF 364
           +WW    V K     +  L+Q  + L+   N+  I R  S+GH F
Sbjct: 96  TWWHPSVVPK-----LKALYQDNYSLVIFSNQNGIPRKPSAGHTF 135


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,066,230
Number of Sequences: 5004
Number of extensions: 64628
Number of successful extensions: 120
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)