Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30228
         (732 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0950 + 21764902-21765912                                         34   0.13 
02_03_0406 + 18663986-18664059,18665082-18665405,18665499-186655...    31   0.94 
12_02_1218 - 27088206-27088214,27088577-27088643,27088755-270888...    29   3.8  
04_03_0103 + 11288977-11290353,11291962-11292075,11294987-112954...    29   5.0  
06_03_0541 - 21944696-21944851,21944939-21945142,21945438-219474...    28   6.6  
03_02_0222 + 6540095-6540099,6541215-6541339,6541440-6541766,654...    28   8.8  

>10_08_0950 + 21764902-21765912
          Length = 336

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 15/46 (32%), Positives = 28/46 (60%)
 Frame = +3

Query: 477 RIPPPTMRHEIELSIVQNYNSKSECMTVSDRQSSGW*DDLP*ALTS 614
           R+PPP   HE  L++++ Y  + E +   + ++S W DD+  A+T+
Sbjct: 47  RLPPPCWTHEETLALIEAYRDRWEGLRKGNLRASDW-DDVAGAVTA 91


>02_03_0406 +
           18663986-18664059,18665082-18665405,18665499-18665559,
           18666136-18666282,18666368-18666492,18666619-18666648,
           18666689-18666893,18667532-18667741,18667886-18667888,
           18670034-18670942,18671239-18672069
          Length = 972

 Score = 31.1 bits (67), Expect = 0.94
 Identities = 18/38 (47%), Positives = 21/38 (55%)
 Frame = +2

Query: 392 LMFFLFFRVSSSWPI*NKSGIRSYRYFDTNTTAHHETR 505
           L++FL F  +S  P  N S IRSY YFD    A H  R
Sbjct: 234 LLYFLRFGSASYLPNSNPS-IRSYSYFDAKFLAEHGAR 270


>12_02_1218 -
           27088206-27088214,27088577-27088643,27088755-27088821,
           27088934-27089054,27089272-27089351,27089574-27089686,
           27090305-27090420,27090507-27090575,27090684-27090758,
           27090836-27090880,27091100-27091187,27091488-27091570,
           27091655-27091705,27091848-27091905,27092019-27092201,
           27092385-27092546,27092713-27093029
          Length = 567

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 462 IDILTRIPPPTMRHEIELSIVQNYNSK 542
           +D +   PPP MRHE  LS+V     K
Sbjct: 172 MDFVIDSPPPEMRHEYHLSMVDRMKDK 198


>04_03_0103 +
           11288977-11290353,11291962-11292075,11294987-11295436,
           11295813-11295910,11296023-11296206,11296979-11297068,
           11301608-11301727,11301812-11302054,11302715-11302988,
           11303237-11303357,11303591-11303849
          Length = 1109

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 19/47 (40%), Positives = 25/47 (53%)
 Frame = +3

Query: 315 ALCSFYFAFECFHTKL*IRGLKMYVV*CFFYSLG*VAHGPSETNRGL 455
           +LC   F  E F+  L  RG++   V C   SLG   +GP+E NR L
Sbjct: 188 SLCFAPFKDEAFNASLLRRGVRASDVACLPISLG--WYGPAEENRRL 232


>06_03_0541 -
           21944696-21944851,21944939-21945142,21945438-21947472,
           21947644-21947720,21948289-21948477,21949188-21949448,
           21949527-21949632,21951330-21951517,21951814-21951971,
           21952015-21952840,21952947-21953210
          Length = 1487

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/46 (28%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
 Frame = -1

Query: 378 SGHGFIAWYENIQR-RSKNYTMQSNL*IYEN-KRTHHLICYEIKLN 247
           SGH + AW E ++R RS  +T++ ++  +++ +   H+  Y + +N
Sbjct: 327 SGHTWKAWSERVERIRSCRFTLEGDILGFQSCQEQQHVFWYPLHVN 372


>03_02_0222 + 6540095-6540099,6541215-6541339,6541440-6541766,
            6541815-6543215,6543268-6543357,6543800-6544515,
            6545549-6545707,6545877-6546186,6546794-6546861,
            6547354-6547896
          Length = 1247

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 11/49 (22%), Positives = 24/49 (48%)
 Frame = +3

Query: 528  NYNSKSECMTVSDRQSSGW*DDLP*ALTSGNTIGDGSTLLYCPENAIYN 674
            N   + + +++ +  S GW D++      G  + + S L Y P+  +Y+
Sbjct: 1132 NAADQDDWVSLQEESSGGWSDEVIQESLQGTVLFNASRLCYSPDAVVYD 1180


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,405,492
Number of Sequences: 37544
Number of extensions: 387485
Number of successful extensions: 723
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)